Difference between revisions of "Documentation/Nightly/Extensions/SliceTracker"
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* [http://ncigt.org/ The National Center for Image-Guided Therapy] (P41 EB015898, PI Tempany) | * [http://ncigt.org/ The National Center for Image-Guided Therapy] (P41 EB015898, PI Tempany) | ||
* [http://qiicr.org Quantitative Image Informatics for Cancer Research (QIICR)] (U24 CA180918, PIs Kikinis and Fedorov).<br> | * [http://qiicr.org Quantitative Image Informatics for Cancer Research (QIICR)] (U24 CA180918, PIs Kikinis and Fedorov).<br> | ||
| − | Contributors: Christian Herz ({{collaborator|name|spl}}), Peter Behringer ({{collaborator|name|spl}}), Andrey Fedorov ({{collaborator|name|spl}}) | + | Contributors: Christian Herz ({{collaborator|name|spl}}), Peter Behringer ({{collaborator|name|spl}}), Andrey Fedorov ({{collaborator|name|spl}})<br> |
Contact: Andrey Fedorov, <email>andrey.fedorov@gmail.com</email><br> | Contact: Andrey Fedorov, <email>andrey.fedorov@gmail.com</email><br> | ||
License: [http://www.slicer.org/pages/LicenseText Slicer License] | License: [http://www.slicer.org/pages/LicenseText Slicer License] | ||
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| + | == ''NOTE: SliceTracker documentation is located here: https://slicerprostate.gitbooks.io/slicetracker'' == | ||
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| − | Slicetracker is a Slicer extension | + | Slicetracker is a 3D Slicer extension for tracking prostate motion during MR-guided prostate biopsies. It implements registration of the pre-procedural to intra-procedural images, which aims to improve reliability of biopsy target re-identification. |
Furthermore, a so called z-Frame registration module is included for correlating the patient and 3D Slicers coordinate system. For guidance of the needle a template grid with 15x14 holes is placed in front of the z-Frame. The optimal hole is computed for inserting the needle and obtaining the tissue sample. | Furthermore, a so called z-Frame registration module is included for correlating the patient and 3D Slicers coordinate system. For guidance of the needle a template grid with 15x14 holes is placed in front of the z-Frame. The optimal hole is computed for inserting the needle and obtaining the tissue sample. | ||
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[4] Behringer P., Herz C., Penzkofer T., Tuncali K., Tempany C., Fedorov A. 2015. Open-source Platform for Prostate Motion Tracking during in-bore Targeted MRI-guided Biopsy. In: MICCAI Workshop on Clinical Image-based Procedures: Translational Research in Medical Imaging. DOI: 10.1007/978-3-319-31808-0_15. | [4] Behringer P., Herz C., Penzkofer T., Tuncali K., Tempany C., Fedorov A. 2015. Open-source Platform for Prostate Motion Tracking during in-bore Targeted MRI-guided Biopsy. In: MICCAI Workshop on Clinical Image-based Procedures: Translational Research in Medical Imaging. DOI: 10.1007/978-3-319-31808-0_15. | ||
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| + | [5] https://blog.kitware.com/clinical-research-employs-3d-slicer-extension/ | ||
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Latest revision as of 15:42, 3 February 2017
Home < Documentation < Nightly < Extensions < SliceTracker
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For the latest Slicer documentation, visit the read-the-docs. |
Introduction and Acknowledgements
NOTE: SliceTracker documentation is located here: https://slicerprostate.gitbooks.io/slicetracker
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Extension Description
Slicetracker is a 3D Slicer extension for tracking prostate motion during MR-guided prostate biopsies. It implements registration of the pre-procedural to intra-procedural images, which aims to improve reliability of biopsy target re-identification.
Furthermore, a so called z-Frame registration module is included for correlating the patient and 3D Slicers coordinate system. For guidance of the needle a template grid with 15x14 holes is placed in front of the z-Frame. The optimal hole is computed for inserting the needle and obtaining the tissue sample.
References
[1] Fedorov A., Tuncali K., Fennessy FM., Tokuda J., Hata N., Wells WM., Kikinis R., Tempany CM. 2012. Image registration for targeted MRI-guided transperineal prostate biopsy. Journal of magnetic resonance imaging: JMRI 36:987–992. DOI: 10.1002/jmri.23688.
[2] Fedorov A., Tuncali K., Penzkofer T., Tokuda J., Song S-E., Hata N., Tempany C. 2013. Quantification of intra-procedural gland motion during transperineal MRI-guided prostate biopsy. In: Proc. of ISMRM’13.
[3] Tokuda J., Tuncali K., Iordachita I., Song S-EE., Fedorov A., Oguro S., Lasso A., Fennessy FM., Tempany CM., Hata N. 2012. In-bore setup and software for 3T MRI-guided transperineal prostate biopsy. Physics in medicine and biology 57:5823–5840. DOI: 10.1088/0031-9155/57/18/5823.
[4] Behringer P., Herz C., Penzkofer T., Tuncali K., Tempany C., Fedorov A. 2015. Open-source Platform for Prostate Motion Tracking during in-bore Targeted MRI-guided Biopsy. In: MICCAI Workshop on Clinical Image-based Procedures: Translational Research in Medical Imaging. DOI: 10.1007/978-3-319-31808-0_15.
[5] https://blog.kitware.com/clinical-research-employs-3d-slicer-extension/
Information for Developers
- Source code on github: https://github.com/SlicerProstate/SliceTracker
