Difference between revisions of "Documentation/4.3/Extensions/VolumeClip"

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* Volume clip with model
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** Removes volume contents inside or outside the selected surface model
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** User may define and dynamically edit a 3D clipping surface by markup points (uses Delaunay triangulation, therefore it mostly generates convex surfaces)
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** For incremental clipping select the input volume also as output volume
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* Volume clip with ROI box
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** Removes volume contents inside or outside the selected region of interest box
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** For incremental clipping select the input volume also as output volume
  
 
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* Remove patient table from CT volumes
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* Clip irrelevant image areas of the input volume before segmentation
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* Create quick mask for registration (apply the processing twice, with zero and non-zero fill value and with the clip outside checkbox enabled and disabled)
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<gallery widths="200px" perrow="4">
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Image:VolumeClipScreenshot1.png|Volume clip with model (before clipping)
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Image:VolumeClipScreenshot2.png|Volume clip with model (after clipping)
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Image:VolumeClipScreenshot3.png|Volume clip with ROI box
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</gallery>
 
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Short video of volume clipping with model: https://www.youtube.com/watch?v=1mYNwJbE7dQ
  
 
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ModelClip
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Source code: see in SlicerRT repository
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Source code: https://subversion.assembla.com/svn/slicerrt/trunk/VolumeClip
 
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Latest revision as of 00:51, 20 October 2014

Home < Documentation < 4.3 < Extensions < VolumeClip


For the latest Slicer documentation, visit the read-the-docs.


Introduction and Acknowledgements

Authors: Andras Lasso (PerkLab, Queen's University), Matt Lougheed (PerkLab, Queen's University)
Contact: Andras Lasso <email>lasso@queensu.ca</email>
Website: http://www.slicerrt.org/
License: Slicer license

Extension Description

VolumeClipLogo.png

This extension contains modules for clipping image volumes with arbitrary surfaces or region of interest boxes.

Modules

  • Volume clip with model
    • Removes volume contents inside or outside the selected surface model
    • User may define and dynamically edit a 3D clipping surface by markup points (uses Delaunay triangulation, therefore it mostly generates convex surfaces)
    • For incremental clipping select the input volume also as output volume
  • Volume clip with ROI box
    • Removes volume contents inside or outside the selected region of interest box
    • For incremental clipping select the input volume also as output volume

Use Cases

  • Remove patient table from CT volumes
  • Clip irrelevant image areas of the input volume before segmentation
  • Create quick mask for registration (apply the processing twice, with zero and non-zero fill value and with the clip outside checkbox enabled and disabled)

  • Volume clip with model (before clipping)

  • Volume clip with model (after clipping)

  • Volume clip with ROI box

Tutorials

Short video of volume clipping with model: https://www.youtube.com/watch?v=1mYNwJbE7dQ

Similar Extensions

Documentation/4.3/Extensions/ModelClip

References

Information for Developers

Work in progress
 Section under construction.

Source code: https://subversion.assembla.com/svn/slicerrt/trunk/VolumeClip

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