Difference between revisions of "Documentation/Nightly/Extensions/OpenCAD"
From Slicer Wiki
| Line 29: | Line 29: | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
{{documentation/{{documentation/version}}/extension-section|Modules}} | {{documentation/{{documentation/version}}/extension-section|Modules}} | ||
| − | *[[Documentation/{{documentation/version}}/Modules/SegmentCAD|SegmentCAD: Segmentation from DCE-MRI]] | + | *[[Documentation/{{documentation/version}}/Modules/SegmentCAD|SegmentCAD: Tumor Segmentation from DCE-MRI]] |
| − | *HeterogeneityCAD | + | *HeterogeneityCAD: Analyze Heterogeneity of Tumor Images and their Parameter Maps |
<!-- ---------------------------- | <!-- ---------------------------- | ||
| Line 39: | Line 39: | ||
{{documentation/{{documentation/version}}/module-section|Tutorials}} | {{documentation/{{documentation/version}}/module-section|Tutorials}} | ||
*SegmentCAD | *SegmentCAD | ||
| − | **[[Media: | + | **[[Media:SegmentCADTutorial.pptx|SegmentCAD Tutorial (pptx)]] |
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
{{documentation/{{documentation/version}}/module-section|Data sets}} | {{documentation/{{documentation/version}}/module-section|Data sets}} | ||
*SegmentCAD | *SegmentCAD | ||
| − | **[[Media:Breast-data1.zip|Breast DCE-MRI Data Set 1 (zip file containing the nrrd volumes for the | + | **[[Media:Breast-data1.zip|Breast DCE-MRI Data Set 1 (zip file containing the nrrd volumes for the tutorial)]] |
**[[Media:Breast-data2.zip|Breast DCE-MRI Data Set 2 (zip file containing additional test set of nrrd volumes)]] | **[[Media:Breast-data2.zip|Breast DCE-MRI Data Set 2 (zip file containing additional test set of nrrd volumes)]] | ||
Revision as of 15:26, 30 April 2014
Home < Documentation < Nightly < Extensions < OpenCAD
|
For the latest Slicer documentation, visit the read-the-docs. |
Introduction and Acknowledgements
|
This work is supported by NA-MIC, NCIGT, and the Slicer Community. | |||||||
This project is supported by P41 RR019703/RR/NCRR NIH HHS/United States, P01 CA067165/CA/NCI NIH HHS/United States and P41 EB015898/EB/NIBIB NIH HHS/United States |
Extension Description
- The SegmentCAD modules is designed to segment tumors from DCE-MRI datasets which include pre-contrast image and post-contrast images at different time points. OpenCAD uses blackbox methods to calculate the wash-in and wash-out slopes from the time-intensity curves. The segmentation output is a Label Map with red, yellow, and blue colors respectively identifying washout (Type III), plateau (Type II), and persistent (Type I) voxels.
- The HeterogeneityCAD module is under development and will apply metrics to analyze the heterogeneity of tumor images and their parameter maps.
Modules
- SegmentCAD: Tumor Segmentation from DCE-MRI
- HeterogeneityCAD: Analyze Heterogeneity of Tumor Images and their Parameter Maps
Tutorials
- SegmentCAD
Data sets
- SegmentCAD
Quick Instructions for Use
- SegmentCAD (Click link for detailed description)
- Select the pre-contrast volume
- Select the first post-contrast volume
- Select the second post-contrast volume
- Select the third post-contrast volume
- Select the fourth post-contrast volume
- Create or select a label map volume node to represent the output of the segmentation
- Click "Apply OpenCAD Segmentation"
Similar Modules
N/A
References
N/A
Information for Developers
Source code: https://github.com/vnarayan13/Slicer-OpenCAD
