Difference between revisions of "Documentation/4.3/Extensions/SlicerRT"
From Slicer Wiki
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* Andras Lasso, <email>lasso@cs.queensu.ca</email> | * Andras Lasso, <email>lasso@cs.queensu.ca</email> | ||
* Mailing list, <email>slicerrt@alerts.assembla.com</email> (need to register to [http://www.assembla.com Assembla] using the email address from which the email is sent) | * Mailing list, <email>slicerrt@alerts.assembla.com</email> (need to register to [http://www.assembla.com Assembla] using the email address from which the email is sent) | ||
| − | * [ | + | * [[Documentation/SlicerRT/HowToReportAnError|How to report an error]] |
Website: [http://slicerrt.github.io slicerrt.org]<br> | Website: [http://slicerrt.github.io slicerrt.org]<br> | ||
License: [http://www.slicer.org/pages/LicenseText Slicer license]<br> | License: [http://www.slicer.org/pages/LicenseText Slicer license]<br> | ||
| − | '''Download/install:''' install 3D Slicer, start 3D Slicer, open the Extension Manager, install the SlicerRT extension (see more details [ | + | '''Download/install:''' install 3D Slicer, start 3D Slicer, open the Extension Manager, install the SlicerRT extension (see more details [http://slicerrt.github.io/Download.html on the download page]) |
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[[Image:SlicerRT_Logo_2.0_128x128.png]] | [[Image:SlicerRT_Logo_2.0_128x128.png]] | ||
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| − | SlicerRT is one of the themes of the SparKit (Software Platform and Adaptive Radiotherapy Kit) project with the goal of making 3D Slicer a powerful radiotherapy research platform. | + | * SlicerRT is one of the themes of the SparKit (Software Platform and Adaptive Radiotherapy Kit) project with the goal of making 3D Slicer a powerful radiotherapy research platform.<br>SparKit is a project funded by Cancer Care Ontarioand the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions. |
| − | SparKit is a project funded by Cancer Care Ontarioand the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions. | ||
| − | The SlicerRT extension incorporates [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] modules and algorithms. | + | * The SlicerRT extension incorporates [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] modules and algorithms. |
| + | |||
| + | * Additional information for users can be found on the [[Documentation/SlicerRT/UsersGuide|User's guide]] page <br> | ||
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|} | |} | ||
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*[[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]] | *[[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]] | ||
| + | *[[Documentation/{{documentation/version}}/Modules/DicomRtExport|DICOM-RT export]] | ||
*[[Documentation/{{documentation/version}}/Modules/Contours|Contours]] | *[[Documentation/{{documentation/version}}/Modules/Contours|Contours]] | ||
*[[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]] | *[[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]] | ||
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* Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp) | * Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp) | ||
**[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]] (Greg Sharp) | **[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]] (Greg Sharp) | ||
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**[[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]] (Greg Sharp) | **[[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]] (Greg Sharp) | ||
**[[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]] | **[[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]] | ||
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| + | **[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]] (Greg Sharp) | ||
| + | **[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]] | ||
**[[Documentation/{{documentation/version}}/Modules/PlmDoseComparison|Plastimatch Dose Comparison]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]] | **[[Documentation/{{documentation/version}}/Modules/PlmDoseComparison|Plastimatch Dose Comparison]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]] | ||
**[[Documentation/{{documentation/version}}/Modules/PlmDoseVolumeHistogram|Plastimatch Dose Volume Histogram]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]] | **[[Documentation/{{documentation/version}}/Modules/PlmDoseVolumeHistogram|Plastimatch Dose Volume Histogram]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]] | ||
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* Evaluation of the effect of image-based non-rigid patient motion compensation | * Evaluation of the effect of image-based non-rigid patient motion compensation | ||
* Dose accumulation with motion compensation | * Dose accumulation with motion compensation | ||
| + | * Evaluation of gel dosimetry | ||
| + | * Testing of treatment planning algorithms | ||
| − | | [[File: | + | | [[File:SlicerRt_Montage.jpg|1024px|SlicerRT highlights]] |
|} | |} | ||
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** Workshop material: [http://www.na-mic.org/Wiki/index.php/File:Pinter_MedUni2013_Workshop.pdf download] from NA-MIC.org | ** Workshop material: [http://www.na-mic.org/Wiki/index.php/File:Pinter_MedUni2013_Workshop.pdf download] from NA-MIC.org | ||
* RSNA 2012 tutorial | * RSNA 2012 tutorial | ||
| − | ** Tutorial description: [https://www.assembla.com/spaces/slicerrt/wiki/20121127_Slicer_tutorials_at_RSNA_2012 | + | ** Tutorial description: [http://www.donotlink.com/bEo SlicerRT wiki: Slicer tutorials at RSNA 2012] |
| + | <!-- Original link: https://www.assembla.com/spaces/slicerrt/wiki/20121127_Slicer_tutorials_at_RSNA_2012 --> | ||
** Sample data: [http://slicer.kitware.com/midas3/folder/859 download] SlicerRT ART dose verification data from Midas server | ** Sample data: [http://slicer.kitware.com/midas3/folder/859 download] SlicerRT ART dose verification data from Midas server | ||
* Summer NA-MIC week 2012 tutorial | * Summer NA-MIC week 2012 tutorial | ||
| − | ** Tutorial presentation: [https://www.assembla.com/spaces/slicerrt/documents/aAuMq81Eqr4ztvacwqjQXA/download/aAuMq81Eqr4ztvacwqjQXA download] from the SlicerRT website | + | ** Tutorial presentation: [http://www.donotlink.com/bEp download] from the SlicerRT website |
| − | + | <!-- Original link: https://www.assembla.com/spaces/slicerrt/documents/aAuMq81Eqr4ztvacwqjQXA/download/aAuMq81Eqr4ztvacwqjQXA --> | |
| + | ** Sample data: [http://www.donotlink.com/bEq download] from the SlicerRT website | ||
| + | <!-- Original link: https://www.assembla.com/spaces/slicerrt/documents/bMuwgYTKur4yP-acwqjQWU/download/bMuwgYTKur4yP-acwqjQWU --> | ||
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{{documentation/{{documentation/version}}/extension-section|References}} | {{documentation/{{documentation/version}}/extension-section|References}} | ||
| − | + | ==How to cite== | |
| + | Please cite the following paper when referring to Plus in your publication:<br> | ||
| + | C. Pinter, A. Lasso, A. Wang, D. Jaffray and G. Fichtinger, [http://perk.cs.queensu.ca/sites/perk.cs.queensu.ca/files/Pinter2012_0.pdf "SlicerRT – Radiation therapy research toolkit for 3D Slicer"], Med. Phys., 39(10) pp. 6332-6338, 2012 | ||
| + | <pre> | ||
| + | @ARTICLE{Pinter2012, | ||
| + | author = {Pinter, C. and Lasso, A. and Wang, A. and Jaffray, D. and Fichtinger, G.}, | ||
| + | title = {SlicerRT – Radiation therapy research toolkit for 3D Slicer}, | ||
| + | journal = {Med. Phys.}, | ||
| + | year = {2012}, | ||
| + | volume = {39}, | ||
| + | number = {10}, | ||
| + | pages = {6332-6338}, | ||
| + | } | ||
| + | </pre> | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
{{documentation/{{documentation/version}}/extension-section|Information for Developers}} | {{documentation/{{documentation/version}}/extension-section|Information for Developers}} | ||
| + | * [http://www.donotlink.com/bEr SlicerRT developers wiki page] | ||
| + | <!-- Original link: https://www.assembla.com/spaces/slicerrt/wiki/SlicerRt_developers_page --> | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
{{documentation/{{documentation/version}}/extension-footer}} | {{documentation/{{documentation/version}}/extension-footer}} | ||
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Revision as of 17:43, 5 November 2013
Home < Documentation < 4.3 < Extensions < SlicerRT
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For the latest Slicer documentation, visit the read-the-docs. |
Introduction and Acknowledgements
Authors: Csaba Pinter (PerkLab, Queen's University), Andras Lasso (PerkLab, Queen's University), Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)
Contributors: Greg Sharp (Massachusetts General Hospital), Steve Pieper (Isomics)
Contacts:
- Andras Lasso, <email>lasso@cs.queensu.ca</email>
- Mailing list, <email>slicerrt@alerts.assembla.com</email> (need to register to Assembla using the email address from which the email is sent)
- How to report an error
Website: slicerrt.org
License: Slicer license
Download/install: install 3D Slicer, start 3D Slicer, open the Extension Manager, install the SlicerRT extension (see more details on the download page)
Extension Description
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Modules
Use Cases
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Tutorials
- Summer NA-MIC week 2013 tutorial (recommended)
- ECR 2013 - Medical University Vienna workshop
- Workshop material: download from NA-MIC.org
- RSNA 2012 tutorial
- Tutorial description: SlicerRT wiki: Slicer tutorials at RSNA 2012
- Sample data: download SlicerRT ART dose verification data from Midas server
- Summer NA-MIC week 2012 tutorial
Similar Extensions
- Plastimatch: SlicerRT and Plastimatch are complementary software libraries. Plastimatch focuses on delivering new computational methods radiotherapy, while SlicerRT aims for providing an easy-to-use interface for a wide range of stable, well-tested radiotherapy related features. SlicerRT uses Plastimatch internally for certain operations.
References
How to cite
Please cite the following paper when referring to Plus in your publication:
C. Pinter, A. Lasso, A. Wang, D. Jaffray and G. Fichtinger, "SlicerRT – Radiation therapy research toolkit for 3D Slicer", Med. Phys., 39(10) pp. 6332-6338, 2012
@ARTICLE{Pinter2012,
author = {Pinter, C. and Lasso, A. and Wang, A. and Jaffray, D. and Fichtinger, G.},
title = {SlicerRT – Radiation therapy research toolkit for 3D Slicer},
journal = {Med. Phys.},
year = {2012},
volume = {39},
number = {10},
pages = {6332-6338},
}
