Difference between revisions of "Documentation/4.3/Modules/Growing"
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===Module Description=== | ===Module Description=== | ||
| − | + | * <span style="color:blue">'''''Input Parameters'''''</span>: | |
| − | + | ** <span style="color:green">'''Baseline Scan (fixed)'''</span> [<span style="color:orange">-f --fixedVolume</span>] : The fixed scan image for registration. | |
| − | + | ** <span style="color:green">'''Follow up Scan (moving)'''</span> [<span style="color:orange">-m --movingVolume</span>] : The moving scan image for registration. | |
| − | + | ** <span style="color:green">'''Baseline Segmentation (fixed)'''</span> [<span style="color:orange">--fixedBinaryVolume</span>] : The fixed one label segmentation image for registration. | |
| − | + | ** <span style="color:green">'''Follow up Segmentation (moving)'''</span> [<span style="color:orange">--movingBinaryVolume</span>] : The moving one label segmentation image for registration. | |
| − | + | ||
| − | + | * <span style="color:blue">'''''Voxel Based Registration Options'''''</span>: | |
| − | | | + | ** <span style="color:green">'''Include ScaleVersor3D registration phase'''</span> [<span style="color:orange">--useScaleVersor3D</span>] : Perform a ScaleVersor3D registration as part of the sequential registration steps. This family of options superceeds the use of transformType if any of them are set. ''Default value: false'' |
| + | ** <span style="color:green">'''Include ScaleSkewVersor3D registration phase'''</span> [<span style="color:orange">--useScaleSkewVersor3D</span>] : Perform a ScaleSkewVersor3D registration as part of the sequential registration steps. This family of options superceeds the use of transformType if any of them are set. ''Default value: false'' | ||
| + | ** <span style="color:green">'''Include Affine registration phase'''</span> [<span style="color:orange">--useAffine</span>] : Perform an Affine registration as part of the sequential registration steps. This family of options superceeds the use of transformType if any of them are set. ''Default value: false'' | ||
| + | |||
| + | * <span style="color:blue">'''''Output Registration Matrix'''''</span>: | ||
| + | ** <span style="color:green">'''Registration Matrix'''</span> [<span style="color:orange">-t --transformPath</span>] : File name for the rigid component of the estimated registration matrix. Can be used to rigidly register the moving image to the fixed image. | ||
| + | |||
| + | * <span style="color:blue">'''''Apply Registration Matrix'''''</span>: | ||
| + | ** <span style="color:green">'''Input Segmentatiton to be Registered'''</span> [<span style="color:orange">--segmentation</span>] : Input segmentation image to be modified with the registration matrix. | ||
| + | ** <span style="color:green">'''Output Registered Scan'''</span> [<span style="color:orange">--segmentationOut</span>] : Output segmentation image. This segmentaiton image is the 'Input Segmentation to be Registered' with the registration matrix already applied. | ||
| + | ** <span style="color:green">'''Output Registered Scan'''</span> [<span style="color:orange">--outputVolume</span>] : Output image for registration. This image is the Follow up Scan with the registration matrix already applied. | ||
| + | |||
| + | ||[[Image:GrowingInterface.png|thumb|280px|User Interface]] | ||
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Revision as of 15:23, 18 September 2013
Home < Documentation < 4.3 < Modules < Growing
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Growing
Growing
General Information
Module Type & Category
Type: CLI
Category: CBCT Scan Registration
Authors, Collaborators & Contact
Author: Vinicius Boen
Contributors: Francois Budin (NIRAL, University of North Carolina), Martin Styner (NIRAL, University Of North Carolina), Beatriz Paniagua (NIRAL, University Of North Carolina), Lucia Cevidanes (University of Michigan - School of Dentistry)
Contact: vboen@umich.edu
Module Description
- Input Parameters:
- Baseline Scan (fixed) [-f --fixedVolume] : The fixed scan image for registration.
- Follow up Scan (moving) [-m --movingVolume] : The moving scan image for registration.
- Baseline Segmentation (fixed) [--fixedBinaryVolume] : The fixed one label segmentation image for registration.
- Follow up Segmentation (moving) [--movingBinaryVolume] : The moving one label segmentation image for registration.
- Voxel Based Registration Options:
- Include ScaleVersor3D registration phase [--useScaleVersor3D] : Perform a ScaleVersor3D registration as part of the sequential registration steps. This family of options superceeds the use of transformType if any of them are set. Default value: false
- Include ScaleSkewVersor3D registration phase [--useScaleSkewVersor3D] : Perform a ScaleSkewVersor3D registration as part of the sequential registration steps. This family of options superceeds the use of transformType if any of them are set. Default value: false
- Include Affine registration phase [--useAffine] : Perform an Affine registration as part of the sequential registration steps. This family of options superceeds the use of transformType if any of them are set. Default value: false
- Output Registration Matrix:
- Registration Matrix [-t --transformPath] : File name for the rigid component of the estimated registration matrix. Can be used to rigidly register the moving image to the fixed image.
- Apply Registration Matrix:
- Input Segmentatiton to be Registered [--segmentation] : Input segmentation image to be modified with the registration matrix.
- Output Registered Scan [--segmentationOut] : Output segmentation image. This segmentaiton image is the 'Input Segmentation to be Registered' with the registration matrix already applied.
- Output Registered Scan [--outputVolume] : Output image for registration. This image is the Follow up Scan with the registration matrix already applied.
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