Difference between revisions of "Documentation/4.2/Extensions/SlicerRT"

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[[File:LogoCco.png|Cancer Care Ontario]]
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[[File:Logo-SparKit.png|SparKit]]
 
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{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
 
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{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
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Authors: Csaba Pinter (PerkLab, Queen's University), Andras Lasso (PerkLab, Queen's University), Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto), Greg Sharp (Massachusetts General Hospital)<br>
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Contact: Andras Lasso, <email>lasso@cs.queensu.ca</email><br>
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This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.<br>
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Website: https://www.assembla.com/spaces/slicerrt<br>
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Author: Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)<br>
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License: [http://www.slicer.org/pages/LicenseText Slicer license]
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Contact: Kevin Wang, <email>kevin.wang@rmp.uhn.on.ca</email><br>
 
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{{documentation/{{documentation/version}}/module-section|Module Description}}
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The {{documentation/modulename}} module creates isosurfaces from an input dose volume and a series of defined isodose levels. The output is a series of surface models grouped under a hierarchy node parent that can be visualized either in the 3D viewer or overlaid on image slices.
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SlicerRT is one of the themes of the SparKit (Software Platform and Adaptive Radiotherapy Kit) project with the goal of making 3D Slicer a powerful radiotherapy research platform.
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SparKit is a project funded by Cancer Care Ontarioand the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.
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The SlicerRT extension incorporates [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] modules and algorithms.
  
 
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N/A
 
  
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*[[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]
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|[[File:SlicerRT0.4 Screenshot Isodose.png|thumb|800px| Contours module GUI]]
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*[[Documentation/{{documentation/version}}/Modules/Contours|Contours]]
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*[[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]
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*[[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]
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*[[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]
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*[[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]
  
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* Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)
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{{documentation/{{documentation/version}}/module-section|Panels and their use}}
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**[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]] (Greg Sharp)
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* Input
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**[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]] (Greg Sharp)
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** Dose volume
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**[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
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** Number of Iso levels
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**[[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]] (Greg Sharp)
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** Iso levels table: color, label and opacity can be set to the isodose surfaces individually
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**[[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
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** Apply: Create isodose surfaces
 
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* Display options
 
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** Show isodose lines: Show/hide isodose lines in 2D slice viewers
 
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** Show isodose surfaces: Show/hide isodose surfaces in the 3D view
 
 
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{{documentation/{{documentation/version}}/module-parametersdescription}}
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**[[Documentation/{{documentation/version}}/Modules/PlmDoseComparison|Plastimatch Dose Comparison]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
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**[[Documentation/{{documentation/version}}/Modules/PlmDoseVolumeHistogram|Plastimatch Dose Volume Histogram]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
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**[[Documentation/{{documentation/version}}/Modules/PlmSyntheticImageGeneration|Plastimatch Synthetic Image Generation]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
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**[[Documentation/{{documentation/version}}/Modules/PlmThreshBox|Plastimatch Threshold in a box]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
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{{documentation/{{documentation/version}}/module-section|Similar Modules}}
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{{documentation/{{documentation/version}}/extension-section|Use Cases}}
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N/A
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* Comparison of dose maps and dose volume histograms from various treatment planning systems
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* Evaluation of the effect of image-based non-rigid patient motion compensation
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* Dose accumulation with motion compensation
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{|align="center"
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|[[File:SlicerRt0.5_ECR2013_Screenshot.png|thumb|800px| Dose volume histogram computation using SlicerRT]]
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|}
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{{documentation/{{documentation/version}}/extension-section|Tutorials}}
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* Summer NA-MIC week 2012 tutorial
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**Tutorial presentation: [https://www.assembla.com/spaces/slicerrt/documents/aAuMq81Eqr4ztvacwqjQXA/download/aAuMq81Eqr4ztvacwqjQXA download] from the SlicerRT website
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** Sample data: [https://www.assembla.com/spaces/slicerrt/documents/bMuwgYTKur4yP-acwqjQWU/download/bMuwgYTKur4yP-acwqjQWU download] from the SlicerRT website
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* RSNA 2012 tutorial
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** Tutorial description: [https://www.assembla.com/spaces/slicerrt/wiki/20121127_Slicer_tutorials_at_RSNA_2012 SlicerRT wiki: Slicer tutorials at RSNA 2012]
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** Sample data: [http://slicer.kitware.com/midas3/folder/859 download] SlicerRT ART dose verification data from Midas server
  
 
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{{documentation/{{documentation/version}}/module-section|References}}
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{{documentation/{{documentation/version}}/extension-section|Similar Extensions}}
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N/A
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* [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]]: SlicerRT and Plastimatch are complementary software libraries. Plastimatch focuses on delivering new computational methods radiotherapy, while SlicerRT aims for providing an easy-to-use interface for a wide range of stable, well-tested radiotherapy related features. SlicerRT uses Plastimatch internally for certain operations.
  
 
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{{documentation/{{documentation/version}}/module-developerinfo}}
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* [https://www.assembla.com/spaces/slicerrt/wiki/SlicerRt_users_guide SlicerRT users guide pages]
  
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{{documentation/{{documentation/version}}/extension-section|Information for Developers}}
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Revision as of 21:51, 8 November 2012

Home < Documentation < 4.2 < Extensions < SlicerRT


Cancer Care Ontario SparKit

Introduction and Acknowledgements

Authors: Csaba Pinter (PerkLab, Queen's University), Andras Lasso (PerkLab, Queen's University), Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto), Greg Sharp (Massachusetts General Hospital)
Contact: Andras Lasso, <email>lasso@cs.queensu.ca</email>
Website: https://www.assembla.com/spaces/slicerrt
License: Slicer license

Extension Description

SlicerRT is one of the themes of the SparKit (Software Platform and Adaptive Radiotherapy Kit) project with the goal of making 3D Slicer a powerful radiotherapy research platform. SparKit is a project funded by Cancer Care Ontarioand the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.

The SlicerRT extension incorporates Plastimatch modules and algorithms.

Modules


Use Cases

  • Comparison of dose maps and dose volume histograms from various treatment planning systems
  • Evaluation of the effect of image-based non-rigid patient motion compensation
  • Dose accumulation with motion compensation
Dose volume histogram computation using SlicerRT

Tutorials

Similar Extensions

  • Plastimatch: SlicerRT and Plastimatch are complementary software libraries. Plastimatch focuses on delivering new computational methods radiotherapy, while SlicerRT aims for providing an easy-to-use interface for a wide range of stable, well-tested radiotherapy related features. SlicerRT uses Plastimatch internally for certain operations.

References

Information for Developers

Work in progress
 Section under construction.
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