Difference between revisions of "Documentation/4.1/SlicerApplication/LookupTables"
From Slicer Wiki
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=Overview= | =Overview= | ||
| − | Slicer offers a variety of predefined lookup tables (LUT). Volumes can be associated with a LUT in the volumes module. Also, [[Documentation/4. | + | Slicer offers a variety of predefined lookup tables (LUT). Volumes can be associated with a LUT in the volumes module. Also, see the [[Documentation/4.1/Modules/Colors|Colors Module]]. |
| − | =LUTs= | + | ==LUTs== |
<gallery widths=200px> | <gallery widths=200px> | ||
file:DiscreteLUTs-2012-02-18.png|''Discrete LUTs'' | file:DiscreteLUTs-2012-02-18.png|''Discrete LUTs'' | ||
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</gallery> | </gallery> | ||
| − | + | ==LUTs for Charting== | |
| − | + | Please see the [[Slicer4:2012_GenericChartColors|Generic Chart Colors]] page. | |
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| − | Please see the [[Slicer4:2012_GenericChartColors| | ||
| − | =LUTs in Slicer= | + | ==LUTs in Slicer== |
| − | You can review and edit LUTs in Slicer via the [[Documentation/{{documentation/version}}/Modules/Colors|Colors module]] | + | You can review and edit LUTs in Slicer via the [[Documentation/{{documentation/version}}/Modules/Colors|Colors module]]. |
=Slicer ColorPicker= | =Slicer ColorPicker= | ||
| − | + | The slicer colorpicker allows to select colors from a label map and to assign them to objects such as surface models or streamlines. | |
| + | [[Image:SlicerColorPicker-2012-02-18.png|200px|left]] | ||
| − | =Custom LUTs= | + | ==Custom LUTs== |
It is relatively easy to create custom LUTs by creating a table with the colors on the wiki. This allows to select specific names and colors when segmenting. See below for an example. | It is relatively easy to create custom LUTs by creating a table with the colors on the wiki. This allows to select specific names and colors when segmenting. See below for an example. | ||
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{| class="wikitable sortable labelpage labelpagetable" border="1" | {| class="wikitable sortable labelpage labelpagetable" border="1" | ||
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* Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords | * Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords | ||
| − | * [http://labelpage.halle.us/ | + | * Go [http://labelpage.halle.us/ here] to create a text file in Slicer LUT format. |
* A custom LUT can be loaded into Slicer like any other file. | * A custom LUT can be loaded into Slicer like any other file. | ||
| + | ===Custom LUT Examples=== | ||
| + | *[[Slicer3:Mori-Atlas_labels|Mori-Atlas labels]] | ||
| + | *[[Slicer3:Lauras_labels|Lauras labels]] | ||
| + | *[[CCA:Atlases:MRI_Brain_Atlas_2010:ColorFile|2010 Brain Atlas]]: Good example of the wiki-based labelpage format, including multiple tables. | ||
| + | *[[Documentation/{{documentation/version}}/SlicerApplication/LUTs/TractographyColors|TractographyColors]] LUT for WM parcellation. | ||
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{{documentation/{{documentation/version}}/slicerapplication-footer}} | {{documentation/{{documentation/version}}/slicerapplication-footer}} | ||
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Revision as of 18:38, 16 August 2012
Home < Documentation < 4.1 < SlicerApplication < LookupTables
Overview
Slicer offers a variety of predefined lookup tables (LUT). Volumes can be associated with a LUT in the volumes module. Also, see the Colors Module.
LUTs
Discrete LUTs
Shade LUTs
Tint LUTs
Freesurfer LUTs
Freesurfer labels
PET LUTs
Cartilage MRI LUTs
Labelmap LUTs
2010 Brain Labels: Label colors for brain segmentation
2010 Label Colors: Colors for a generic labelmap
Generic Labelmap LUTs
GenericAnatomyColors: default LUT
GenericColors
LUTs for Charting
Please see the Generic Chart Colors page.
LUTs in Slicer
You can review and edit LUTs in Slicer via the Colors module.
Slicer ColorPicker
The slicer colorpicker allows to select colors from a label map and to assign them to objects such as surface models or streamlines.
Custom LUTs
It is relatively easy to create custom LUTs by creating a table with the colors on the wiki. This allows to select specific names and colors when segmenting. See below for an example.
| integer_label | text_label | color | notes |
|---|---|---|---|
| 0 | background | rgba(0,0,0,0) | |
| 1 | tissue | rgb(128,174,128) | Default label for bodily tissues |
| 2 | bone | rgb(241,214,145) | |
| 3 | skin | rgb(177,122,101) | |
| 4 | connective tissue | rgb(111,184,210) |
- Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
- Go here to create a text file in Slicer LUT format.
- A custom LUT can be loaded into Slicer like any other file.
Custom LUT Examples
- Mori-Atlas labels
- Lauras labels
- 2010 Brain Atlas: Good example of the wiki-based labelpage format, including multiple tables.
- TractographyColors LUT for WM parcellation.
