Difference between revisions of "EMSegmenter-Tasks:Template"
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=Anatomical Tree= | =Anatomical Tree= | ||
| − | + | -- Define Anatomical Tree used in mrml file - first list the complete name and then the abbreviating used in the mrml file | |
* root | * root | ||
** background (BG) | ** background (BG) | ||
*** air (AIR) | *** air (AIR) | ||
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| − | |||
=Atlas= | =Atlas= | ||
Revision as of 21:51, 8 December 2010
Home < EMSegmenter-Tasks:TemplateReturn to EMSegmenter Task Overview Page
Contents
This wiki template can be used for new tasks
Description
-- Data Assumption
-- description of pipeline with citations to algorithms used
Anatomical Tree
-- Define Anatomical Tree used in mrml file - first list the complete name and then the abbreviating used in the mrml file
- root
- background (BG)
- air (AIR)
- background (BG)
Atlas
- how did you construct the atlas ?
-- what did you do for skull stripping or any other preprocessing
-- What did you do for group registration
-- how did you generate the segmentations
-- how many set of images did you use
-- where did you get the data from
Atlas was generated based on 82 scans and corresponding segmentations provided by Psychiatry Neuroimaging Laboratory, BWH. We registered the scans to a preselected template via Warfield et al. 2001.
Image Dimension = 256 x 256 x 124
Image Spacing = 0.9375 x 0.9375 x 1.5
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| Template (T1) | CSF | GM | WM |
Result
Acknowledgment
The construction of the pipeline was supported by funding from NIH NCRR 2P41RR013218 Supplement.
Citations
- Pohl K, Bouix S, Nakamura M, Rohlfing T, McCarley R, Kikinis R, Grimson W, Shenton M, Wells W. A Hierarchical Algorithm for MR Brain Image Parcellation. IEEE Transactions on Medical Imaging. 2007 Sept;26(9):1201-1212.
