Difference between revisions of "EMSegmenter-Tasks:Non-Human-Primate"
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Image Dimension = 256 x 256 x 252 <br> | Image Dimension = 256 x 256 x 252 <br> | ||
Image Spacing = 0.4688 x 0.4688 x 0.50002 | Image Spacing = 0.4688 x 0.4688 x 0.50002 | ||
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| + | | [[Image:EMSegmenter_NHP_template_t1.png|210px]] | ||
| + | | [[Image:EMSegmenter_NHP_CSF.png|210px]] | ||
| + | | [[Image:EMSegmenter_NHP_GM.png|210px]] | ||
| + | | [[Image:EMSegmenter_NHP_WM.png|210px]] | ||
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| + | | Template (T1) | ||
| + | | CSF | ||
| + | | GM | ||
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=Result= | =Result= | ||
Revision as of 22:55, 1 December 2010
Home < EMSegmenter-Tasks:Non-Human-PrimateReturn to EMSegmenter Task Overview Page
Description
Non Human Primate pipeline ...TODO
Anatomical Tree
- Root
- Head
- intracranial cavity (ICC)
- TODO (WGC)
- grey matter (GM)
- TODO (lSGM)
- left caudate (lCaudate)
- left putamen (lPutamen)
- left hippocampus (lHippocampus)
- TODO (rSGM)
- right caudate (rCaudate)
- right putamen (rPutamen)
- right hippocampus (rHippocampus)
- TODO (CGM)
- TODO (lSGM)
- white matter (WM)
- cerebrospinal fluid (CSF)
- grey matter (GM)
- Brainstem
- Cerebellum
- TODO (WGC)
- background (BG)
- intracranial cavity (ICC)
- Head
Atlas
Image Dimension = 256 x 256 x 252
Image Spacing = 0.4688 x 0.4688 x 0.50002
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| Template (T1) | CSF | GM | WM |
Result
Collaborators
Andriy Fedorov (BWH)
Citations
- Tustison NJ, Avants BB, Cook PA, Zheng Y, Egan A, Yushkevich PA, Gee JC N4ITK: Improved N3 Bias Correction, IEEE Trans Med Imag, 2010
- Pohl K, Bouix S, Nakamura M, Rohlfing T, McCarley R, Kikinis R, Grimson W, Shenton M, Wells W. A Hierarchical Algorithm for MR Brain Image Parcellation. IEEE Transactions on Medical Imaging. 2007 Sept;26(9):1201-1212.
- S. Warfield, J. Rexilius, P. Huppi, T. Inder, E. Miller, W. Wells, G. Zientara, F. Jolesz, and R. Kikinis, “A binary entropy measure to assess nonrigid registration algorithms,” in MICCAI, LNCS, pp. 266–274, Springer, October 2001.
- Johnson H.J., Harris G., Williams K. BRAINSFit: Mutual Information Registrations of Whole-Brain 3D Images, Using the Insight Toolkit, The Insight Journal, July 2007
