Difference between revisions of "EMSegmenter-Tasks:MRI-Human-Brain-Parcellation"
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==Result== | ==Result== | ||
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| − | + | [[Image:MRI-Human-Brain-Parcellation_3x360x360.png]] | |
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==Collaborators== | ==Collaborators== | ||
Padmapriya Srinivasan and Sylvain Bouix (PNL-BWH) | Padmapriya Srinivasan and Sylvain Bouix (PNL-BWH) | ||
Revision as of 20:05, 30 November 2010
Home < EMSegmenter-Tasks:MRI-Human-Brain-ParcellationDescription
MRI Human Head pipeline for a finer-grained parcellation (Priya please provide description and proper citation)
Anatomical Tree
The anatomical tree represents the structures to be segmented. Node labels displayed below contain a human readable structure name and in parentheses the internally used structure name.
- Root
- background (BG)
- grey matter (GM)
- left temporal grey matter (LTGM)
- left temporal grey matter - region 1 (LTGM1)
- left temporal grey matter - region 2 (LTGM2)
- left temporal grey matter - region 3 (LTGM3)
- left temporal grey matter - region 4 (LTGM4)
- right temporal grey matter (RTGM)
- right temporal grey matter - region 1 (RTGM1)
- right temporal grey matter - region 2 (RTGM2)
- right temporal grey matter - region 3 (RTGM3)
- right temporal grey matter - region 4 (RTGM4)
- subcortical grey matter (SUBGM)
- left temporal grey matter (LTGM)
- white matter (WM)
- left temporal white matter (LTWM)
- left temporal white matter - region 1 (LTWM1)
- left temporal white matter - region 2 (LTWM2)
- left temporal white matter - region 3 (LTWM3)
- left temporal white matter - region 4 (LTWM4)
- right temporal white matter (RTWM)
- right temporal white matter - region 1 (RTWM1)
- right temporal white matter - region 2 (RTWM2)
- right temporal white matter - region 3 (RTWM3)
- right temporal white matter - region 4 (RTWM4)
- subcortical white matter (SUBWM)
- left temporal white matter (LTWM)
- cerebrospinal fluid (CSF)
Atlas
The atlas hes been created by Padmapriya Srinivasan and Sylvain Bouix from (PNL-BWH)
Image Dimension = 256 x 256 x 220
Image Spacing = 0.9375 x 0.9375 x 0.9375
TODO, some details about atlas
Pre-Processing
- 1 step: image inhomogeneity correction N4ITKBiasFieldCorrection
- 2 step: atlas-to-target registration BRAINSFit
- 3 step: automatic mean/covariance calculation. (TODO Kilian)
Result
Collaborators
Padmapriya Srinivasan and Sylvain Bouix (PNL-BWH)
