Difference between revisions of "EMSegmenter-Tasks:MRI-Human-Brain-Parcellation"
From Slicer Wiki
Belhachemi (talk | contribs) |
|||
| Line 19: | Line 19: | ||
**** right temporal grey matter - region 3 (RTGM3) | **** right temporal grey matter - region 3 (RTGM3) | ||
**** right temporal grey matter - region 4 (RTGM4) | **** right temporal grey matter - region 4 (RTGM4) | ||
| − | *** | + | *** subcortical grey matter (SUBGM) |
** white matter (WM) | ** white matter (WM) | ||
*** left temporal white matter (LTWM) | *** left temporal white matter (LTWM) | ||
| Line 31: | Line 31: | ||
**** right temporal white matter - region 3 (RTWM3) | **** right temporal white matter - region 3 (RTWM3) | ||
**** right temporal white matter - region 4 (RTWM4) | **** right temporal white matter - region 4 (RTWM4) | ||
| − | *** | + | *** subcortical white matter (SUBWM) |
** cerebrospinal fluid (CSF) | ** cerebrospinal fluid (CSF) | ||
Revision as of 18:05, 30 November 2010
Home < EMSegmenter-Tasks:MRI-Human-Brain-ParcellationDescription
MRI Human Head pipeline for a finer-grained parcellation (Priya please provide description and proper citation)
Anatomical Tree
The anatomical tree represents the structures to be segmented. Node labels displayed below contain a human readable structure name and in parentheses the internally used structure name.
- Root
- background (BG)
- grey matter (GM)
- left temporal grey matter (LTGM)
- left temporal grey matter - region 1 (LTGM1)
- left temporal grey matter - region 2 (LTGM2)
- left temporal grey matter - region 3 (LTGM3)
- left temporal grey matter - region 4 (LTGM4)
- right temporal grey matter (RTGM)
- right temporal grey matter - region 1 (RTGM1)
- right temporal grey matter - region 2 (RTGM2)
- right temporal grey matter - region 3 (RTGM3)
- right temporal grey matter - region 4 (RTGM4)
- subcortical grey matter (SUBGM)
- left temporal grey matter (LTGM)
- white matter (WM)
- left temporal white matter (LTWM)
- left temporal white matter - region 1 (LTWM1)
- left temporal white matter - region 2 (LTWM2)
- left temporal white matter - region 3 (LTWM3)
- left temporal white matter - region 4 (LTWM4)
- right temporal white matter (RTWM)
- right temporal white matter - region 1 (RTWM1)
- right temporal white matter - region 2 (RTWM2)
- right temporal white matter - region 3 (RTWM3)
- right temporal white matter - region 4 (RTWM4)
- subcortical white matter (SUBWM)
- left temporal white matter (LTWM)
- cerebrospinal fluid (CSF)
Atlas
The atlas hes been created by Padmapriya Srinivasan and Sylvain Bouix from (PNL-BWH)
Image Dimension = 256 x 256 x 220
Image Spacing = 0.9375 x 0.9375 x 0.9375
TODO, some details about atlas
Pre-Processing
- 1 step: image inhomogeneity correction N4ITKBiasFieldCorrection
- 2 step: atlas-to-target registration BRAINSFit
- 3 step: automatic mean/covariance calculation. (TODO Kilian)
Result
TODO: New Screenshots (Dominique)
- T1(3 views)
- Labelmap(3 views)
Collaborators
Padmapriya Srinivasan and Sylvain Bouix (PNL-BWH)
