Difference between revisions of "EMSegmenter-Tasks:Non-Human-Primate"

Revision as of 17:05, 30 November 2010

Home < EMSegmenter-Tasks:Non-Human-Primate

Image Dimension = 256 x 256 x 252
Image Spacing = 0.4688 x 0.4688 x 0.50002

Andriy Fedorov (BWH)

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-==Legend==
-BG: background <br>
-LT: left temporal <br>
-GM: grey matter <br>
-WM: white matter <br>
-CSF: cerebrospinal fluid <br>
-ICC: Intracranial Cavity <br>
-WGC: <br>
-lSGM: <br>
-rSGM: <br>
-CGM: <br>
-BG: Background <br>
-<br>
 ==Anatomical Tree==
 * Root
 ** Head
-*** ICC
+***  intracranial cavity (ICC)
-**** WGC
+**** '''TODO''' (WGC)
-***** GM
+***** grey matter (GM)
-****** lSGM
+****** '''TODO''' (lSGM)
-******* lCaudate
+******* left caudate (lCaudate)
-******* lPutamen
+******* left putamen (lPutamen)
-******* lHippocampus
+******* left hippocampus (lHippocampus)
-****** rSGM
+****** '''TODO''' (rSGM)
-******* rCaudate
+******* right caudate (rCaudate)
-******* rPutamen
+******* right putamen (rPutamen)
-******* rHippocampus
+******* right hippocampus (rHippocampus)
-****** CGM
+****** '''TODO''' (CGM)
-***** WM
+***** white matter (WM)
-***** CSF
+***** cerebrospinal fluid (CSF)
 **** Brainstem
 **** Cerebellum
-*** BG
+*** background (BG)
 ==Atlas==
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 Image Dimension = 256 x 256 x 252 <br>
 Image Spacing   = 0.4688 x 0.4688 x 0.50002
+==Pre-Processing==
+* 1 step: image inhomogeneity correction [http://www.slicer.org/slicerWiki/index.php/Modules:N4ITKBiasFieldCorrection-Documentation-3.6 N4ITKBiasFieldCorrection]
+* 2 step: atlas-to-target registration [http://www.slicer.org/slicerWiki/index.php/Modules:BRAINSFit BRAINSFit]
+* 3 step: automatic mean/covariance calculation. ('''TODO Kilian''')
 ==Result==