Modules:AtlasCreator-Documentation-3.5

Return to Slicer 3.5 Documentation

Atlas Creator

AtlasCreator

Download AtlasCreator with Slicer 3.5 nightly build

Run Slicer, click on 'All Modules', and then 'AtlasCreator'

User interface of AtlasCreator module in Slicer 3.5

General Information

Module Type & Category

Type: Interactive

Category: Segmentation

Authors, Collaborators & Contact

• Sylvain Jaume, MIT
• Raphaël Olszewski, UCL
• Ron Kikinis, BWH
• Polina Golland, MIT
• Contact: sylvain at csail.mit.edu

Download

• Go to: http://slicer.org/pages/Special:SlicerDownloads
• Type of download: Nightly Builds
• File to download: Choose either linux, darwin (Mac) or win32 (Windows)
• Click on 'Download'

Module Description

This module creates a statistical atlas using segmented data sets.

Usage

Examples, Use Cases & Tutorials

• This module serves to bootstrap the EMSegment module.

Quick Tour of Features and Use

The workflow of this module consists of the following steps:

File:AtlasCreator-initialization-controls.jpg Control panel for initialization File:AtlasCreator-result-controls.jpg Control panel adjustment

Development

Some of the desired features:

• add ability to initialize registration using fiducials
• improve documentation
• integration with EMSegment

Known bugs

Follow this link to the Slicer3 bug tracker.

Usability issues

Follow this link to the Slicer3 bug tracker. Please select the usability issue category when browsing or contributing.

Source code & documentation

Source code can accessed here

Links to documentation generated by doxygen.

More Information

Acknowledgment

File:AtlasCreator-acknowledgements.jpg Supported by NA-MIC Core 1 Algorithms