Difference between revisions of "Slicer3.4:Training"
From Slicer Wiki
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= Slicer Tutorial Contest (under construction)= | = Slicer Tutorial Contest (under construction)= | ||
| − | The following tutorials were part of the [http://www.na-mic.org/Wiki/index.php/Events:TutorialContestJune2009Summer 2009 Slicer tutorial contest]: | + | The following tutorials were part of the [http://www.na-mic.org/Wiki/index.php/Events:TutorialContestJune2009Summer Summer 2009 Slicer tutorial contest] and [http://www.na-mic.org/Wiki/index.php/Events:TutorialContestJan2009 Winter 2009 Slicer tutorial contest]. |
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| style="background:#CCFF66; color:black" align="Center"| <span id="1.1"></span> '''Summer 2009''' | | style="background:#CCFF66; color:black" align="Center"| <span id="1.1"></span> '''Summer 2009''' | ||
| − | | style="background:#CCFF99; color:black" | '''[http://www.na-mic.org/Wiki/index.php/File:ARCTIC-Slicer3-Tutorial.pdf ARCTIC: Automatic Regional Cortical ThICkness V2.1] ''' | + | | style="background:#CCFF99; color:black" | '''[http://www.na-mic.org/Wiki/index.php/File:ARCTIC-Slicer3-Tutorial.pdf ARCTIC: Automatic Regional Cortical ThICkness V2.1] ''' |
| style="background:#CCFF99; color:black" | [http://www.nitrc.org/projects/arctic/ ARCTIC Data] | | style="background:#CCFF99; color:black" | [http://www.nitrc.org/projects/arctic/ ARCTIC Data] | ||
| style="background:#CCFF99; color:black" align="Center"| | | style="background:#CCFF99; color:black" align="Center"| | ||
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| style="background:#CCFF99; color:black" | '''[http://www.na-mic.org/Wiki/index.php/File:Stochastic_June09_1.ppt Python Stochastic Tractography Module] ''' | | style="background:#CCFF99; color:black" | '''[http://www.na-mic.org/Wiki/index.php/File:Stochastic_June09_1.ppt Python Stochastic Tractography Module] ''' | ||
| style="background:#CCFF99; color:black" | [http://www.na-mic.org/Wiki/index.php/File:IJdata.tar.gz Stochastic Tractography Data] | | style="background:#CCFF99; color:black" | [http://www.na-mic.org/Wiki/index.php/File:IJdata.tar.gz Stochastic Tractography Data] | ||
| + | | style="background:#CCFF99; color:black" align="Center"| | ||
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| + | | style="background:#CCFF66; color:black" align="Center"| <span id="1.1"></span> '''Summer 2009''' | ||
| + | | style="background:#CCFF99; color:black" | '''[http://www.na-mic.org/Wiki/index.php/File:Slicer3Training_WhiteMatterLesions_v2.2.1.pdf White Matter Lesions Segmentation V2.2] ''' | ||
| + | | style="background:#CCFF99; color:black" | [http://www.na-mic.org/Wiki/index.php/File:LesionSegmentationTutorialData.zip Lesion Segmentation Tutorial Data] | ||
| style="background:#CCFF99; color:black" align="Center"| | | style="background:#CCFF99; color:black" align="Center"| | ||
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| style="background:#CCFF66; color:black" align="Center"| <span id="1.1"></span> '''Winter 2009''' | | style="background:#CCFF66; color:black" align="Center"| <span id="1.1"></span> '''Winter 2009''' | ||
| − | | style="background:#CCFF99; color:black" | '''[http://www.na-mic.org/Wiki/index.php/File:Slicer3Training_WhiteMatterLesions_v2.0.ppt.pdf White Matter Lesions Segmentation] ''' | + | | style="background:#CCFF99; color:black" | '''[http://www.na-mic.org/Wiki/index.php/File:Slicer3Training_WhiteMatterLesions_v2.0.ppt.pdf White Matter Lesions Segmentation V2.0] ''' |
| style="background:#CCFF99; color:black" | [http://www.na-mic.org/Wiki/index.php/File:LesionSegmentationTutorialData.zip Lesion Segmentation Tutorial Data] | | style="background:#CCFF99; color:black" | [http://www.na-mic.org/Wiki/index.php/File:LesionSegmentationTutorialData.zip Lesion Segmentation Tutorial Data] | ||
| style="background:#CCFF99; color:black" align="Center"| | | style="background:#CCFF99; color:black" align="Center"| | ||
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} | } | ||
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= Older Versions = | = Older Versions = | ||
*Visit the [http://wiki.na-mic.org/Wiki/index.php/Slicer3.2:Training Slicer 3.2 training page]. | *Visit the [http://wiki.na-mic.org/Wiki/index.php/Slicer3.2:Training Slicer 3.2 training page]. | ||
*Visit the [http://wiki.na-mic.org/Wiki/index.php/Slicer:Workshops:User_Training_101 Slicer 2 training page]. | *Visit the [http://wiki.na-mic.org/Wiki/index.php/Slicer:Workshops:User_Training_101 Slicer 2 training page]. | ||
Revision as of 22:58, 20 August 2009
Home < Slicer3.4:TrainingContents
Software Installation
- The Slicer download page contains information on how to obtain a compiled version of Slicer for a variety of platforms and where to find the source code for Slicer 3.
Software Documentation
- For the Slicer 3.4 manual pages please click here. These pages are the reference manual for Slicer 3.4 and briefly explain the functionality found in panels and modules.
Slicer 3.4 Tutorials
- The following table contains "How to" tutorials with matched sample data sets. They demonstrate how to use the 3D Slicer environment to accomplish certain tasks.
| Category | Tutorial | Sample Data | |
| Basic | Slicer3Minute Tutorial The Slicer3Minute tutorial is an introduction to the advanced 3D visualization capabilities of Slicer3.4. Audience: First time users. |
Slicer3Minute dataset The Slicer3Minute dataset contains an MR scan of the brain and 3D reconstructions of the anatomy |
|
| Core | Slicer3Visualization Tutorial The Slicer3Visualization tutorial guides through 3D data loading and visualization in Slicer3.4. Audience: All beginning users including clinicians, scientists, engineers and programmers. |
Slicer3Visualization dataset The Slicer3VisualizationDataset contains two MR scans of the brain, a pre-computed labelmap and 3D reconstructions of the anatomy. |
|
| Core | Programming in Slicer3 Tutorial The Programming in Slicer3 tutorial is an introduction to the the integration of stand-alone programs outside of the Slicer3 source tree. Audience: Programmers and Engineers. |
HelloWorld_Plugin.zip The HelloWorld tutorial dataset contains an MR scan of the brain and pre-computed xml and C++ files for integrating the Hello World plug-in to Slicer3. |
|
| Specialized | 3D Visualization of FreeSurfer Data The course guides through 3D visualization of FreeSurfer brain segmentations, surface reconstruction and parcellation results in Slicer3.4. Audience: All users. |
FreeSurferTutorialData.zip The FreeSurfer dataset contains an MR scan of the brain and pre-computed FreeSurfer segmentation and cortical surface reconstructions. |
|
Slicer Tutorial Contest (under construction)
The following tutorials were part of the Summer 2009 Slicer tutorial contest and Winter 2009 Slicer tutorial contest.
}Older Versions
- Visit the Slicer 3.2 training page.
- Visit the Slicer 2 training page.
| Contest | Tutorial | Sample Data | Screenshot |
| Summer 2009 | Confocal Microscopy (First Prize) | -- | |
| Summer 2009 | ARCTIC: Automatic Regional Cortical ThICkness V2.1 | ARCTIC Data | |
| Summer 2009 | Trans-rectal MR guided prostate biopsy | -- | |
| Summer 2009 | Python Stochastic Tractography Module | Stochastic Tractography Data | |
| Summer 2009 | White Matter Lesions Segmentation V2.2 | Lesion Segmentation Tutorial Data | |
| Winter 2009 | IA FEMesh Tutorial | Mesh Tutorial Example Data | |
| Winter 2009 | Non-Human Primate Segmentation Tutorial | Non-Human Primate Segmentation Data | |
| Winter 2009 | MR Guided Prostate Interventions | MR Guided Prostate Interventions Data | |
| Winter 2009 | Basic Navigation Tutorial | Basic Navigation Data | |
| Winter 2009 | Python Stochastic Tractography Tutorial V1.0 | Stochastic Tractography Data | |
| Winter 2009 | ARCTIC: Automatic Regional Cortical ThICkness V1.0 (First Prize) | ARCTIC Data | |
| Winter 2009 | White Matter Lesions Segmentation V2.0 | Lesion Segmentation Tutorial Data |
