View source for Slicer3:Mori-Atlas labels

 [[Slicer3:LUTs_and_Ontologies|Back to LUTs and Ontologies]]

*Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
* [http://labelpage.halle.us/ Go here] to create a text file in Slicer LUT format. '''WARNING''': the conversion fails on the alpha channel if using rgba(R, G, B, 255) instead of rgb(R, G, B) or rgba(R, G, B, 1.0). If the last column of the generated text file contains 65025, change it to 255.
* [[Slicer3:Mori-Atlas_labels_JHU-MNI_SS_Type-I]]
* [[Slicer3:Mori_Atlas_labels_JHU-MNI_SS_Type-II]]
* [[Slicer3:Mori_Atlas_labels_JHU-MNI_SS_Type-III]]
*List

=Look-up Table for the Mori WM Atlas labels=
Work in progress.
{| class="wikitable sortable labelpage labelpagetable" border="1"
! integer_label
! text_label
! color
|-
| 0
| Background
|style="color:white; background:black"| rgba(0,0,0,0)
|-
| 1
| MCP_Middle_cerebellar_peduncle
| style="background:gold"| gold
|-
| 2
| PCT_Pontine_crossing_tract_(a_part_of_MCP) genotype
| style="background:navajowhite"| navajowhite
|-
| 3 
| GCC_Genu_of_corpus_callosum
| style="background:plum"| plum
|-
| 4 
| BCC_Body_of_corpus_callosum
| style="background:pink"| pink
|-
| 5 
| SCC_Splenium_of_corpus_callosum
| style="background:deeppink"| deeppink
|-
|6 
| FX_Fornix_(column_and_body_of_fornix)
| style="background:peru"| peru
|-
|7 
| CST-R_Corticospinal_tract_right
| style="background:tan"| tan
|-
| 8 
| CST-L_Corticospinal_tract_left
| style="background:tan"| tan
|-
| 9 
| ML-R_Medial_lemniscus_right
| style="background:mediumspringgreen"| mediumspringgreen
|-
| 10 
| ML-L_Medial_lemniscus_left
| style="background:mediumspringgreen"| mediumspringgreen
|-
| 11 
| ICP-R_Inferior_cerebellar_peduncle_right
| style="background:palegreen"| palegreen
|-
| 12 
| ICP-L_Inferior_cerebellar_peduncle_left
| style="background:palegreen"| palegreen
|-
| 13 
| SCP-R_Superior_cerebellar_peduncle_right
| style="background:bisque"| bisque
|-
| 14 
| SCP-L_Superior_cerebellar_peduncle_left
| style="background:bisque"| bisque
|-
| 15 
| CP-R_Cerebral_peduncle_right
| style="background:khaki"| khaki
|-
| 16 
| CP-L_Cerebral_peduncle_left
| style="background:khaki"| khaki
|-
| 17 
| ALIC-R_Anterior_limb_of_internal_capsule_right
| style="background:lightskyblue"| lightskyblue
|-
| 18 
| ALIC-L_Anterior_limb_of_internal_capsule_left
| style="background:lightskyblue"| lightskyblue
|-
| 19 
| PLIC-R_Posterior_limb_of_internal_capsule_right
| style="background:dodgerblue"| dodgerblue
|-
| 20 
| PLIC-L_Posterior_limb_of_internal_capsule_left
| style="background:dodgerblue"| dodgerblue
|-
| 21 
| RLIC-R_Retrolenticular_part_of_internal_capsule_right
| style="background:deepskyblue"| deepskyblue
|-
| 22 
| RLIC-L_Retrolenticular_part_of_internal_capsule_left
| style="background:deepskyblue"| deepskyblue
|-
| 23 
| ACR-R_Anterior_corona_radiata_right
| style="background:powderblue"| powderblue
|-
| 24 
| ACR-L_Anterior_corona_radiata_left
| style="background:powderblue"| powderblue
|-
| 25 
| SCR-R_Superior_corona_radiata_right
| style="background:blue"| blue
|-
| 26 
| SCR-L_Superior_corona_radiata_left
| style="background:blue"| blue
|-
| 27 
| PCR-R_Posterior_corona_radiata_right
| style="background:skyblue"| skyblue
|-
| 28 
| PCR-L_Posterior_corona_radiata_left
| style="background:skyblue"| skyblue
|-
| 29 
| PTR-R_Posterior_thalamic_radiation_(include_optic_radiation)_right
| style="background:sandybrown"| sandybrown
|-
| 30 
| PTR-L_Posterior_thalamic_radiation_(include_optic_radiation)_left
| style="background:sandybrown"| sandybrown
|-
| 31 
| SS-R_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_right
| style="background:peachpuff"| peachpuff
|-
| 32 
| SS-L_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_left
| style="background:peachpuff"| peachpuff
|-
| 33 
| EC-R_External_capsule_right
| style="background:darksalmon"| darksalmon
|-
| 34 
| EC-L_External_capsule_left
| style="background:darksalmon"| darksalmon
|-
| 35 
| CGC-R_Cingulum_(cingulate_gyrus)_right
| style="background:mediumseagreen"| mediumseagreen
|-
| 36 
| CGC-L_Cingulum_(cingulate_gyrus)_left
| style="background:mediumseagreen"| mediumseagreen
|-
| 37 
| CGH-R_Cingulum_(hippocampus)_right
| style="background:darkkhaki"| darkkhaki
|-
| 38 
| CGH-L_Cingulum_(hippocampus)_left
| style="background:darkkhaki"| darkkhaki
|-
| 39 
| FX-R_Fornix_Stria_terminalis_right
| style="background:darkgoldenrod"| darkgoldenrod
|-
| 40 
| FX-L_Fornix_Stria_terminalis_left
| style="background:darkgoldenrod"| darkgoldenrod
|-
| 41 
| SLF-R_Superior_longitudinal_fasciculus_right
| style="background:lightgray"| lightgray
|-
| 42 
| SLF-L_Superior_longitudinal_fasciculus_left
| style="background:lightgray"| lightgray
|-
| 43 
| SFO-R_Superior_fronto-occipital_fasciculus_right
| style="background:darkgrey"| darkgrey
|-
| 44 
| SFO-R_Superior_fronto-occipital_fasciculus_left
| style="background:darkgrey"| darkgrey
|-
| 45 
| IFO-R_Inferior_fronto-occipital_fasciculus_right
| style="background:gray"| gray
|-
| 46 
| IFO-L_Inferior_fronto-occipital_fasciculus_left
| style="background:gray"| gray
|-
| 47 
| UNC-R_Uncinate_fasciculus_right
| style="background:brown"| brown
|-
| 48 
| UNC-L_Uncinate_fasciculus_left
| style="background:brown"| brown
|-
| 49 
| TAP-R_Tapetum_right
| style="background:mistyrose"| mistyrose
|-
| 50 
| TAP-L_Tapetum_left
| style="background:mistyrose"| mistyrose
|}