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=== Computational Morphometry Toolkit (CMTK) ===

== General Information ==

=== Module Type & Category ===

Type: CLI

Category: Registration, Segmentation, Artifact Correction

=== Authors, Collaborators & Contact ===

* Torsten Rohlfing, torsten@synapse.sri.com (primary contact)
* Michael P. Hasak

With contributions from:
* Martin H. Rademacher
* Calvin R. Maurer, Jr.
* Daniel B. Russakoff

=== Module Description ===

CMTK is a collection of command line software tools for:
* image registration: affine and nonrigid, pairwise and groupwise, single-channel and multi-channel
* segmentation: atlas-based, levelset-like
* artifact correction: intensity bias field, motion

== Development ==

===Dependencies===

None.

===Known bugs===

Follow this [http://www.nitrc.org/tracker/?group_id=212 link] to the bug tracker at NITRC. 

===Source code & documentation===

Source code and API documentation are available at [http://www.nitrc.org/projects/cmtk NITRC].

The CMTK User Guide can also be downloaded from the [http://www.insight-journal.org/browse/publication/706 Insight Journal].

== More Information == 

===License===

CMTK is distributed under the GPLv3.

===Acknowledgment===

Supported by NIH-NIBIB R01 EB008381

===References===

A list of papers describing the algorithms implemented in CMTK is available [https://neuro.sri.com/cmtk/wiki/index.php/List_of_References_by_Tool here].

Papers using CMTK tools are listed [https://neuro.sri.com/cmtk/wiki/index.php/List_of_References_by_Tool here].