View source for GtractCostFastMarching

===Module Type & Category===

Type: CLI

Category: Diffusion.GTRACT



===Authors, Collaborators & Contact===

Author: This tool was developed by Vincent Magnotta and Greg Harris. The original code here was developed by Daisy Espino.

Contributors: Funding for this version of the GTRACT program was provided by NIH/NINDS R01NS050568-01A2S1



===Module Description===

{| style="color:green" border="1"

|Program title || Cost Fast Marching

|-
|Program version || 4.0.0

|-
|Program documentation-url || https://www.slicer.org/wiki/Modules:GTRACT |-
|}

* <span style="color:blue">'''''Input Image Files''''' </span> Parameters for specifying the diffusion tensor image set
** <span style="color:green">'''Input Tensor Image Volume'''</span> [<span style="color:orange">--inputTensorVolume</span>] : Required: input tensor image file name
** <span style="color:green">'''Input Anisotropy Image Volume'''</span> [<span style="color:orange">--inputAnisotropyVolume</span>] : Required: input anisotropy image file name
** <span style="color:green">'''Input Starting Seeds LabelMap Volume'''</span> [<span style="color:orange">--inputStartingSeedsLabelMapVolume</span>] : Required: input starting seeds LabelMap image file name
** <span style="color:green">'''Starting Seeds Label'''</span> [<span style="color:orange">--startingSeedsLabel</span>] : Label value for Starting Seeds
* <span style="color:blue">'''''Output Files''''' </span> Output files generated by the fast marching vcl_cost function
** <span style="color:green">'''Output Cost Image'''</span> [<span style="color:orange">--outputCostVolume</span>] : Output vcl_cost image
** <span style="color:green">'''Output Speed Image'''</span> [<span style="color:orange">--outputSpeedVolume</span>] : Output speed image
* <span style="color:blue">'''''Fast Marching Tracking Parameters''''' </span> Input parameters controlling the Fast Marching Cost Function
** <span style="color:green">'''Anisotropy Weight'''</span> [<span style="color:orange">--anisotropyWeight</span>] : Anisotropy weight used for vcl_cost function calculations
** <span style="color:green">'''Stopping Value'''</span> [<span style="color:orange">--stoppingValue</span>] : Terminiating value for vcl_cost function estimation
** <span style="color:green">'''Seed Threshold'''</span> [<span style="color:orange">--seedThreshold</span>] : Anisotropy threshold used for seed selection