View source for CCA:Atlases:MRI Brain Atlas 2010:ColorFile

__NOTOC__

 [[Slicer3:LUTs_and_Ontologies|Back to LUT and ontologies page]]

*Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
* [http://labelpage.halle.us/ Go here] to create a text file in Slicer LUT format.


[[Category:LabelPage]]
[[Category:LabelPageSlicerColorFile]]
== Title ==
'''NAC CCA Core 2010 MRI Brain Atlas'''
== Description ==
This file contains the label information for the 2010 MRI Brain Atlas from the NAC CCA Core.

== Credits ==
; Authors
: Ion-Florin Talos MD
: Michael Halle PhD

; Institutions
: Center for Computational Anatomy Core, Neuroimage Analysis Center, Surgical Planning Lab, Brigham and Women's Hospital

; Grants
: Neuroimage Analysis Center (NAC), National Institutes of Health (NIH), National Center for Research Resources (NCRR),  NIH P41 RR13218.

; Creation Date
: 02/16/2009

==  Imports ==

Lookup table information can be imported from other pages by adding links to those pages in a section like this one named "Imports". 

The atlas doesn't currently import any such files.

== Lookup table information ==

Any tables defined with class "labelpagetable"  in the wiki markup will be interpreted as part of  the color file description. The information in the tables are concatenated. For color file construction, the tables need to have columns named "integer_label", "text_label", and "color".  These columns can appear in any order.  Other columns can be included (for example, "notes").

Multiple tables can be used to organize large sets of labels for efficient viewing and editing.

The "color" column uses either CSS3-type color descriptions or raw integer values to describe the red, green, blue, and possibly alpha values of the color.

=== Non-anatomic entities ===

{| class="wikitable sortable labelpage labelpagetable" border="1"
! integer_label
! text_label
! color
! notes
|-
| 0
| background
| rgba(0,0,0,0.0)
| The background label is included here because it isn't an anatomical structure.
|}

=== Atlas lookup table ===
{| class="wikitable sortable labelpage labelpagetable" border="1"
|-
! id
! integer_label
! text_label
! color
! radlex_id
! radlex_structure_id
! cca_atlas_id
! notes
|-
| int2
| 2
| white matter of left cerebral hemisphere
| rgb(245,245,245)
| RID16998
| RID16998
| 
| 
|-
| int4
| 4
| left lateral ventricle
| rgb(90,105,215)	
| RID13807
| RID13807
| 
| 
|-
| int5
| 5
| temporal horn of left lateral ventricle
| rgb(90,170,215)
| RID13803
| RID13803
| 
| 
|-
| int7
| 7
| white matter of left hemisphere of cerebellum
| rgb(180,210,120)
| RID17313
| RID17313
| 
| 
|-
| int8
| 8
| left cerebellar cortex
| rgb(230,150,35)
| RID15574
| RID15574
| 
| 
|-
| int10
| 10
| left thalamus
| rgb(0,120,15)
| RID13496
| RID13496
| 
| 
|-
| int11
| 11
| left caudate nucleus
| rgb(120,185,220)
| RID21020
| RID21020
| 
| 
|-
| int12
| 12
| left putamen
| rgb(175,20,130)
| RID21015
| RID21015
| 
| 
|-
| int13
| 13
| left globus pallidus pars externa
| rgb(10,50,255)
| RID18435
| RID18435
| 
| 
|-
| int15
| 15
| fourth ventricle
| rgb(90,105,215)
| RID7147
| RID7147
| 
| 
|-
| int17
| 17
| left hippocampus
| rgb(220,216,20)
| RID26565
| RID26565
| 
| 
|-
| int18
| 18
| left amygdala
| rgb(105,255,255)
| RID15698
| RID15698
| 
| 
|-
| int19
| 19
| cerebral aqueduct
| rgb(55,225,218)
| RID7171
| RID7171
| 
| 
|-
| int24
| 24
| third ventricle
| rgb(90,105,215)
| RID7137
| RID7137
| 
| 
|-
| int25
| 25
| left globus pallidus pars interna
| rgb(255,165,0)
| RID18438
| RID18438
| 
| 
|-
| int26
| 26
| left nucleus accumbens
| rgb(165,0,255)
| RID21022
| RID21022
| 
| 
|-
| int27
| 27
| left middle cerebellar peduncle
| rgb(0,255,130)
| RID18080
| RID18080
| 
| 
|-
| int28
| 28
| unsegmented region of left hypothalamus
| rgb(165,40,40)
| RID6639
| RID6639
| CCAX-RID6639-L-U
| 
|-
| int31
| 31
| choroid plexus of left cerebral hemisphere
| rgb(90,105,215)
| RID27793
| RID27793
| 
| 
|-
| int34
| 34
| left superior cerebellar peduncle
| rgb(120,135,50)
| RID18078
| RID18078
| 
| 
|-
| int35
| 35
| unsegmented region of pons
| rgb(50,50,135)
| RID6728
| RID6728
| CCAX-RID6728-U
| 
|-
| int40
| 40
| unsegmented region of midbrain
| rgb(205,60,80)
| RID6768
| RID6768
| CCAX-RID6768-U
| 
|-
| int41
| 41
| white matter of right cerebral hemisphere
| rgb(200,225,200)
| RID16997
| RID16997
| 
| 
|-
| int43
| 43
| right lateral ventricle
| rgb(90,105,215)
| RID13806
| RID13806
| 
| 
|-
| int44
| 44
| temporal horn of right lateral ventricle
| rgb(90,170,215)	
| RID13802
| RID13802
| 
| 
|-
| int46
| 46
| white matter of right hemisphere of cerebellum
| rgb(180,210,120)
| RID17312
| RID17312
| 
| 
|-
| int47
| 47
| right cerebellar cortex
| rgb(230,150,35)
| RID15573
| RID15573
| 
| 
|-
| int49
| 49
| right thalamus
| rgb(0,120,15)
| RID13495
| RID13495
| 
| 
|-
| int50
| 50
| right caudate nucleus
| rgb(120,185,220)
| RID21019
| RID21019
| 
| 
|-
| int51
| 51
| right putamen
| rgb(175,20,130)
| RID21014
| RID21014
| 
| 
|-
| int52
| 52
| right globus pallidus pars externa
| rgb(15,50,255)
| RID18434
| RID18434
| 
| 
|-
| int53
| 53
| right hippocampus
| rgb(220,215,20)
| RID26564
| RID26564
| 
| 
|-
| int54
| 54
| right amygdala
| rgb(105,255,255)
| RID15699
| RID15699
| 
| 
|-
| int58
| 58
| right nucleus accumbens
| rgb(255,165,0)
| RID21021
| RID21021
| 
| 
|-
| int60
| 60
| unsegmented region of right hypothalamus
| rgb(165,40,40)
| RID6639
| RID6639
| CCAX-RID6639-R-U
| 
|-
| int61
| 61
| medulla oblongata
| rgb(135,205,235)
| RID6681
| RID6681
| 
| 
|-
| int63
| 63
|choroid plexus of right cerebral hemisphere
| rgb(90,105,215)
| RID27792
| RID27792
| 
| 
|-
| int66
| 66
| left substantia nigra
| rgb(120,135,50)
| RID20742
| RID20742
| 
| 
|-
| int71
| 71
| right substantia nigra
| rgb(120,135,50)
| RID20741
| RID20741
| 
| 
|-
| int72
| 72
| pineal body
| rgb(120,190,150)
| RID6576
| RID6576
| 
| 
|-
| int78
| 78
| left optic tract
| rgb(255,150,10)
| RID22698
| RID22698
| 
| 
|-
| int79
| 79
| left red nucleus
| rgb(255,150,10)
| RID20702
| RID20702
| 
| 
|-
| int83
| 83
| right globus pallidus pars interna
| rgb(15,50,255)
| RID18437
| RID18437
| 
| 
|-
| int84
| 84
| right red nucleus
| rgb(255,220,185)
| RID20701
| RID20701
| 
| 
|-
| int85
| 85
| optic chiasm
| rgb(234,170,30)
| RID6641
| RID6641
| 
| 
|-
| int96
| 96
| pellucid septum
| rgb(205,10,125)
| RID6525
| RID6525
| 
| 
|-
| int100
| 100
| left mammillothalamic tract
| rgb(125,140,180)
| RID17575
| RID17575
| CCAX-RID17563-L
| 
|-
| int142
| 142
| anterior commissure
| rgb(220,225,70)
| RID6911
| RID6911
| 
| 
|-
| int200
| 200
| right mammillothalamic tract
| rgb(0,50,130)
| RID17574
| RID17574
| CCAX-RID17563-R
| 
|-
| int216
| 216
| right optic tract
| rgb(255,205,100)
| RID22697
| RID22697
| 
| 
|-
| int1000
| 1000
| unsegmented region of left insula
| rgb(125,5,25)
| RID13871
| RID13871
| CCAX-RID13871-U
| 
|-
| int1001
| 1001
| left superior temporal gyrus (banks of left superior temporal sulcus)
| rgb(25,100,40)
| RID20309
| RID13889
| 
| 
|-
| int1002
| 1002
| caudal part of left anterior cingulate gyrus
| rgb(125,100,160)
| RID26841
| RID26841
| CCAX-RID26841-S
| 
|-
| int1003
| 1003
| posterior part of left middle frontal gyrus
| rgb(100,25,0)
| RID26835
| RID14075
| 
| 
|-
| int1005
| 1005
| left cuneus
| rgb(220,20,100)
| RID20356
| RID26552
| 
| 
|-
| int1006
| 1006
| left ambiens gyrus
| rgb(185,15,10)
| RID26595
| RID26595
| 
| 
|-
| int1007
| 1007
| left fusiform gyrus
| rgb(180,220,140)
| RID26541
| RID26541
| 
| 
|-
| int1008
| 1008
| unsegmented region of left inferior parietal lobule
| rgb(180,90,185)
| RID27590
| RID14108
| CCAX-RID14108-U
| 
|-
| int1009
| 1009
| left inferior temporal gyrus
| rgb(180,40,120)
| RID20315
| RID13893
| 
| 
|-
| int1010
| 1010
| isthmus of left cingulate gyrus
| rgb(140,20,140)
| RID20384
| RID14043
| 
| 
|-
| int1011
| 1011
| left lateral occipital gyrus
| rgb(20,30,140)
| RID20353
| RID13938
| 
| 
|-
| int1012
| 1012
| left lateral orbital gyrus
| rgb(35,75,50)
| RID20293
| RID13924
| 
| 
|-
| int1013
| 1013
| left lingual gyrus
| rgb(225,140,140)
| RID20359
| RID26554
| 
| 
|-
| int1014
| 1014
| left straight gyrus
| rgb(200,35,75)
| RID20278
| RID13906
| 
| 
|-
| int1015
| 1015
| left middle temporal gyrus
| rgb(160,100,50)
| RID20312
| RID13891
| 
| 
|-
| int1016
| 1016
| left parahippocampal gyrus
| rgb(250,250,250)
| RID20306
| RID13956
| 
| 
|-
| int1017
| 1017
| left paracentral lobule
| rgb(60,175,80)
| RID27593
| RID14112
| 
| 
|-
| int1018
| 1018
| opercular part of left inferior frontal gyrus
| rgb(70,180,30)
| RID22705
| RID13978
| 
| 
|-
| int1019
| 1019
| orbital part of left inferior frontal gyrus
| rgb(220,180,140)
| RID22708
| RID13981
| 
| 
|-
| int1020
| 1020
| triangular part of left inferior frontal gyrus
| rgb(220,60,20)
| RID22702
| RID13975
| 
| 
|-
| int1021
| 1021
| left visual cortex
| rgb(120,100,60)
| RID25841
| RID25841
| 
| 
|-
| int1022
| 1022
| left postcentral gyrus
| rgb(195,40,40)
| RID20334
| RID13928
| 
| 
|-
| int1023
| 1023
| left posterior cingulate gyrus
| rgb(220,180,220)
| RID20378
| RID14049
| 
| 
|-
| int1024
| 1024
| left precentral gyrus
| rgb(95,75,175)
| RID20275
| RID13912
| 
| 
|-
| int1025
| 1025
| left precuneus
| rgb(160,140,180)
| RID20346
| RID13963
| 
| 
|-
| int1026
| 1026
| rostral part of left anterior cingulate gyrus
| rgb(80,20,140)
| RID26838
| RID26838
| CCAX-RID26838-S
| look at structure id
|-
| int1027
| 1027
| anterior part of left middle frontal gyrus
| rgb(75,50,125)
| RID26832
| RID14069
| 
| 
|-
| int1028
| 1028
| left superior frontal gyrus
| rgb(50,160,150)
| RID20269
| RID13903
| 
| 
|-
| int1029
| 1029
| left superior parietal lobule
| rgb(20,180,140)
| RID20343
| RID14110
| 
| may include precuneus in labeling
|-
| int1030
| 1030
| left superior temporal gyrus
| rgb(140,220,220)
| RID20309
| RID13889
| 
| 
|-
| int1031
| 1031
| left supramarginal gyrus
| rgb(80,160,20)
| RID20337
| RID13930
| 
| May include angular gyrus
|-
| int1032
| 1032
| left frontal pole
| rgb(100,0,100)
| RID26767
| RID20409
| 
| 
|-
| int1033
| 1033
| left temporal pole
| rgb(70,70,70)
| RID26770
| RID20416
| 
| 
|-
| int1034
| 1034
| left transverse temporal gyrus
| rgb(150,150,200)
| RID20330
| RID26543
| 
| 
|-
| int1035
| 1035
| limen of left insula
| rgb(145,50,65)
| RID26595 
| 
| 
| 
|-
| int2000
| 2000
| unsegmented region of right insula
| rgb(80,196,98)
| RID13870
| RID13870
| CCAX-RID13870-U
| 
|-
| int2001
| 2001
| right superior temporal gyrus (banks of right superior temporal sulcus)
| rgb(25,100,40)
| RID20308
| RID13888
| 
| 
|-
| int2002
| 2002
| caudal part of right anterior cingulate gyrus
| rgb(125,100,160)
| RID26840
| RID26840
| CCAX-RID26840-S
| 
|-
| int2003
| 2003
| posterior part of right middle frontal gyrus
| rgb(100,25,0)
| RID26834
| RID14074
| 
| 
|-
| int2005
| 2005
| right cuneus
| rgb(220,20,100)
| RID20355
| RID26551
| 
| 
|-
| int2006
| 2006
| right ambiens gyrus
| rgb(220,20,100)
| RID26594
| RID26594
| 
| 
|-
| int2007
| 2007
| right fusiform gyrus
| rgb(180,220,140)
| RID20317
| RID26540
| 
| 
|-
| int2008
| 2008
| unsegmented region of right inferior parietal lobule
| rgb(185,90,185)
| RID15673
| RID14107
| CCAX-RID14107-U
| 
|-
| int2009
| 2009
| right inferior temporal gyrus
| rgb(180,40,120)
| RID20314
| RID13892
| 
| 
|-
| int2010
| 2010
| isthmus of right cingulate gyrus
| rgb(140,20,140)
| RID20383
| RID14042
| 
| 
|-
| int2011
| 2011
| right lateral occipital gyrus
| rgb(20,30,140)
| RID20352
| RID13937
| 
| 
|-
| int2012
| 2012
| right lateral orbital gyrus
| rgb(35,75,50)
| RID20292
| RID13923
| 
| 
|-
| int2013
| 2013
| right lingual gyrus
| rgb(225,140,140)
| RID20358
| RID26553
| 
| 
|-
| int2014
| 2014
| right straight gyrus
| rgb(200,35,75)
| RID20277
| RID13905
| 
| 
|-
| int2015
| 2015
| right middle temporal gyrus
| rgb(160,100,50)
| RID20311
| RID13890
| 
| 
|-
| int2016
| 2016
| right parahippocampal gyrus
| rgb(45,165,45)
| RID20305
| RID13955
| 
| 
|-
| int2017
| 2017
| right paracentral lobule
| rgb(105,205,105)
| RID27592
| RID14111
| 
| 
|-
| int2018
| 2018
| opercular part of right inferior frontal gyrus
| rgb(220,180,140)
| RID22704
| RID13977
| 
| 
|-
| int2019
| 2019
| orbital part of right inferior frontal gyrus
| rgb(20,100,50)
| RID22707
| RID13980
| 
| 
|-
| int2020
| 2020
| triangular part of right inferior frontal gyrus
| rgb(220,60,20)
| RID22701
| RID13974
| 
| 
|-
| int2021
| 2021
| right visual cortex
| rgb(120,100,60)
| RID25840
| RID25840
| 
| 
|-
| int2022
| 2022
| right postcentral gyrus
| rgb(195,40,40)
| RID20333
| RID13927
| 
| 
|-
| int2023
| 2023
| right posterior cingulate gyrus
| rgb(220,180,220)
| RID20377
| RID14048
| 
| 
|-
| int2024
| 2024
| right precentral gyrus
| rgb(95,75,175)
| RID20274
| RID13911
| 
| 
|-
| int2025
| 2025
| right precuneus
| rgb(160,140,180)
| RID20345
| RID13962
| 
| 
|-
| int2026
| 2026
| rostral part of right anterior cingulate gyrus
| rgb(80,20,140)
| RID26837
| RID26837
| CCAX-RID26837-S
| look at structure id
|-
| int2027
| 2027
| anterior part of right middle frontal gyrus
| rgb(75,50,125)
| RID26831
| RID14068
| 
| 
|-
| int2028
| 2028
| right superior frontal gyrus
| rgb(50,160,150)
| RID20268
| RID13902
| 
| 
|-
| int2029
| 2029
| right superior parietal lobule
| rgb(20,180,140)
| RID20342
| RID14109
| 
| may include precuneus
|-
| int2030
| 2030
| right superior temporal gyrus
| rgb(140,220,220)
| RID20308
| RID13888
| 
| 
|-
| int2031
| 2031
| right supramarginal gyrus
| rgb(80,160,20)
| RID20336
| RID13929
| 
| may include angular  gyrus
|-
| int2032
| 2032
| right frontal pole
| rgb(100,0,100)
| RID26766
| RID20408
| 
| 
|-
| int2033
| 2033
| right temporal pole
| rgb(70,70,70)
| RID26769
| RID20415
| 
| 
|-
| int2034
| 2034
| right transverse temporal gyrus
| rgb(150,150,200)
| RID20329
| RID26542
| 
|
|-
| int2035
| 2035
| limen of right insula
| rgb(110, 150, 120)
| RID26594
| 
| 
|
|-
| int2108
| 2108
| right angular and supramarginal gyri (obsolete label)
| rgb(230,250,230)
| RID22701
| RID13974
| 
| 
|-
| int3000
| 3000
| right claustrum
| rgb(230,250,230)
| RID15701
| RID15701
| 
| 
|-
| int3001
| 3001
| left claustrum
| rgb(230,155,215)
| RID15700
| RID15700
| 
| 
|-
| int3002
| 3002
| right mammillary body
| rgb(130,155,95)
| RID26776
| RID26776
| 
| 
|-
| int3003
| 3003
| left mammillary body
| rgb(155,230,255)
| RID26777
| RID26777
| 
| 
|-
| int3004
| 3004
| corpus callosum
| rgb(250,240,20)
| RID6915
| RID6915
| 
| 
|-
| int3005
| 3005
| right fornix of forebrain
| rgb(35,235,155)
| RID18106
| RID18106
| 
| 
|-
| int3007
| 3007
| left fornix of forebrain
| rgb(75,35,115)
| RID18107
| RID18107
| 
| 
|-
| int3008
| 3008
| infundibulum of neurohypophysis
| rgb(35,195,35)
| RID15529
| RID15529
| 
| 
|-
| int3011
| 3011
| adenohypophysis
| rgb(235,225,115)
| RID15522
| RID15522
| 
| 
|-
| int3012
| 3012
| unsegmented region of neurohypophysis
| rgb(220,180,205)
| RID6645
| RID6645
| CCAX-RID6645-U 
| 
|}

=== Thalamic Nuclei Expansion ===
{| class="wikitable sortable labelpage labelpagetable" border="1"
! integer_label
! text_label
! color
! notes
! radlex_id
! radlex_structure_id
|-
| 500
| right internal medullary lamina
| rgb(200,200,200)
|  style="background:#C8C8C8"|
| RID18025
| RID18025
|-
| 501
| left internal medullary lamina
| rgb(200,200,200)
| style="background:#C8C8C8"|
| RID18026
| RID18026
|-
| 502
| right medial geniculate body
| rgb(125,250,20)
| style="background:#7DFA14"|
| RID20560
| RID20560
|-
| 503
| left medial geniculate body
| rgb(125,250, 20)
| style="background:#7DFA14"|
| RID20561
| RID20561
|-
| 504
| right lateral geniculate body
| rgb(100,180,255)
| style="background:#64B4FF"|
| RID20562
| RID20562
|-
| 505
| left lateral geniculate body
| rgb(100,180,255)
| style="background:#64B4FF"|
| RID20563
| RID20563
|-
| 506
| right pulvinar
| rgb(63,105,225)
| style="background:#3F69E1"|
| RID20564
| RID20564
|-
| 507
| left pulvinar
| rgb(63,105,225)
| style="background:#3F69E1"|
| RID20565
| RID20565
|-
| 508
| right anterior thalamic nucleus
| rgb(255,25,130)
| style="background:#FF1982; color:#fff"|in the old SPL-BrainAtlas-Colorfile.txt ''L'' and ''R'' are mislabeled (switched)
| RID20544
| RID20544
|-
| 509
| left anterior thalamic nucleus 
| rgb(255,25,130)
| style="background:#FF1982; color:#fff"|in the old SPL-BrainAtlas-Colorfile.txt ''L'' and ''R'' are mislabeled (switched)
| RID20545
| RID20545
|-
| 510
| right dorsomedial thalamic nucleus
| rgb(60,190,130)
| style="background:#3CBD82"|
| RID20535
| RID20535
|-
| 511
| left dorsomedial thalamic nucleus
| rgb(60,190,130)
| style="background:#3CBD82"|
| RID20536
| RID20536
|-
| 512
| right centromedian thalamic nucleus
| rgb(190,180,105)
| style="background:#BEB469"|
| RID20568
| RID20568
|-
| 513
| left centromedian thalamic nucleus
| rgb(190,180,105)
| style="background:#BEB469"|
| RID20569
| RID20569
|-
| 514
| right ventral anterior thalamic nucleus
| rgb(255,213,0)
| style="background:#FFD500"|
| RID20929
| RID20929
|-
| 515
| left ventral anterior thalamic nucleus 
| rgb(255,213,0)
| style="background:#FFD500"|
| RID20930
| RID20930
|-
| 516
| right ventral lateral thalamic nucleus
| rgb(60,180,180)
| style="background:#3CB4B4"|
| RID20931
| RID20931
|-
| 517
| left ventral lateral thalamic nucleus
| rgb(60,180,180)
| style="background:#3CB4B4"|
| RID20932
| RID20932
|-
| 518
| right lateral posterior thalamic nucleus
| rgb(205,130,0)
| style="background:#CD8200"|
| RID20927
| RID20927
|-
| 519
| left lateral posterior thalamic nucleus
| rgb(205,130,0)
| style="background:#CD8200"|
| RID20928
| RID20928
|-
| 520
| right lateral dorsal thalamic nucleus
| rgb(175,190,220)
| style="background:#AFBEDC"|
| RID20925
| RID20925
|-
| 521
| left lateral dorsal thalamic nucleus
| rgb(175,190,220)
| style="background:#AFBEDC"|
| RID20926
| RID20926
|-
| 522
| right ventral posteromedial thalamic nucleus
| rgb(225,170,105)
| style="background:#FFAA69"|
| RID20506
| RID20506
|-
| 523
| left ventral posteromedial thalamic nucleus
| rgb(225,170,105)
| style="background:#FFAA69"|
| RID20507
| RID20507
|-
| 524
| right ventral posterolateral thalamic nucleus
| rgb(230,130,130)
| style="background:#E68282"|
| RID20504
| RID20504
|-
| 525
| left ventral posterolateral thalamic nucleus
| rgb(230,130,130)
| style="background:#E68282"|
| RID20505
| RID20505
|}

=== Extra Freesurfer labels ===

See [[Slicer3:Freesurfer_labels]].