View source for Stanford Simbios group

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=Aim=
To develop a generic semi-automatic segmentation toolkit to convert images of musculoskeletal structures to 3D models.

=Process Flowchart=
[[Image:flowchart.JPG|left| Process Diagram.]]

=Progress=
==Atlas Generation from Input MR Images==
===Model Generation from Input MR Images===
Pre-Segmented models for femur, patella and tibia are obtained for a patient (in .stl format). This models can be prepared using the hypermesh software. The models contain vertices of triangles representing femur, tibia and patella regions.
===Create a filled label map using PolyDataToFilledLabelMap module in slicer===
===EM Segmentation based on the atlas===

==Register Images==
===Register Images Module in Slicer===


=Datasets=