View source for CCA:Atlases:Florins 2010 Hierarchy Short

 [[Slicer3:LUTs_and_Ontologies| Back to LUTs and Ontologies]]

*Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
* [http://labelpage.halle.us/ Go here] to create a text file in Slicer LUT format. '''WARNING''': the conversion fails on the alpha channel if using rgba(R, G, B, 255) instead of rgb(R, G, B) or rgba(R, G, B, 1.0). If the last column of the generated text file contains 65025, change it to 255.


=material=
==tissues==
*tissue of nervous system
**gray matter
**white matter
**nerve
*tissue of circulatory system
**vein
**artery
**capillary
*connective tissue
**ligament
**tendon
**cartilage
**muscle
*tissue of skeleton
**bone
*tissue of lymphatic system
**lymph node
**lymphatic vessel
*anatomical space

==biological material==
*blood
*cerebro-spinal fluid
*bile
*urine
*feces
==non-biological material==
*air
*liquid

=pathology=
*tumor
*edema
*bleeding
*necrosis
*clot
*embolism

=human body=
==head==
===central nervous system===
====brain====
*brain parenchyma
**gray matter of brain
***telencephalon
****cerebral cortex
*****right frontal lobe
*****left frontal lobe
*****right temporal lobe
*****left temporal lobe
*****right parietal lobe
*****left parietal lobe
*****right occipital lobe
*****left occipital lobe
*****right insular lobe
*****left insular lobe
*****right limbic lobe
*****left limbic lobe
*****right striatum
******right caudate nucleus
******right putamen
*****left striatum
******left caudate nucleus
******left putamen
*****right pallidum
*****left pallidum
*****right amygdaloid complex
*****left amygdaloid complex
***diencephalon
***thalamus
****right thalamus
****left thalamus
****pineal gland
****posterior commissure
***gray matter of midbrain
****substantia nigra
*****right substantia nigra
*****left substantia nigra
**cerebral white matter
***right superior longitudinal fasciculus
***left superior longitudinal fasciculus
***right inferior longitudinal fasciculus
***left inferior longitudinal fasciculus
***right arcuate fasciculus
***left arcuate fasciculus
***right uncinate fasciculus
***left uncinate fasciculus
***right cingulum bundle
***left cingulum bundle
***projection fibers
****right corticospinal tract
****left corticospinal tract
****right optic radiation
****left optic radiation
****right medial lemniscus
****left medial lemniscus
****right superior cerebellar peduncle
****left superior cerebellar peduncle
****right middle cerebellar peduncle
****left middle cerebellar peduncle
****right inferior cerebellar peduncle
****left inferior cerebellar peduncle
****optic chiasm
****left optic tract
****right optic tract
****right fornix
****left fornix
***commissural fibers
****corpus callosum
****posterior commissure
**cerebellar white matter
*CSF spaces
**ventricles of brain
***right lateral ventricle
***left lateral ventricle
***third ventricle
***cerebral aqueduct
***fourth ventricle
**subarachnoid space

====spinal cord====
*gray matter of spinal cord
*white matter of spinal cord

====endocrine system of brain====
*pituitary gland
**adenohypophysis
**neurohypophysis
====meninges====
*dura mater
*arachnoid
*pia mater
===soft tissue of head===
*skin of head
*muscles of head
*salivary glands
*lips
*nose
*tongue
*soft palate
*right external ear
*left external ear
*right middle ear
*left middle ear
*right internal ear
*left internal ear
*right eyeball
*left eyeball

===skeleton of the head===
====skull====
*right frontal bone
*left frontal bone
*right parietal bone
*left parietal bone
*right temporal bone
*left temporal bone
*right sphenoid bone
*left sphenoid bone
*right ethmoid bone
*left ethmoid bone
*occipital bone
*maxilla
*right zygomatic bone
*left zygomatic bone
*right lacrimal bone
*left lacrimal bone
*vomer bone
*right palatine bone
*left palatine bone
*mandible

====teeth====

==neck==

===soft tissue of neck===
====skin of neck====
====muscles of neck====
====pharynx====
====larynx====

====thyroid gland====
====parathyroid glands====
*right parathyroid glands
*left parathyroid glands

===skeleton of neck===
*hyoid bone
*cervical vertebral column

==thorax==
===soft tissue of thorax===
====contents of thoracic cavity====
=====trachea=====
=====bronchial system=====

=====right lung=====
*superior lobe of right lung
*middle lobe of right lung
*inferior lobe of right lung
=====left lung=====
*superior lobe of left lung
*inferior lobe of left lung
=====pleura=====

=====heart=====
*right atrium
*left atrium
*atrial septum
*ventricular septum
*right ventricle of heart
*left ventricle of heart
*mitral valve
*tricuspid valve
*aortic valve
*pulmonary valve

=====pericardium=====
*pericardial cavity
=====esophagus=====
=====thymus=====
=====mediastinum=====
====soft tissue of thoracic wall====
=====skin of thoracic wall=====
=====muscles of thoracic wall=====
===skeleton of thorax===
*thoracic vertebral column
*ribs
*sternum
*right clavicle
*left clavicle

==abdomen==
===soft tissue of abdomen===
====contents of abdominal cavity====
*peritoneum
**omentum
**peritoneal cavity
*retroperitoneal space
*stomach
*duodenum
*small bowel
*colon
**anus
*liver
*biliary tree
*gallbladder
*pancreas
*spleen
*urinary system
**right kidney
**left kidney
**right ureter
**left ureter
**urinary bladder
**urethra
*right adrenal gland
*left adrenal gland
*female internal genitalia
**uterus
**right fallopian tube
**left fallopian tube
**right ovary
**left ovary
**vagina
*male internal genitalia
**prostate
**right seminal vesicle
**left seminal vesicle
**right deferent duct
**left deferent duct
====soft tissue of abdominal wall====
=====skin of abdominal wall=====
=====muscles of abdominal wall=====

===skeleton of abdomen===
====vertebral column of abdomen====
=====lumbar vertebral column=====

==female external genitalia==

==male external genitalia==

==upper limbs==

===right upper limb===
====right shoulder====
====right arm====
====right elbow====
====right forearm====
====right hand====
===left upper limb===
====left shoulder====
====left arm====
====left elbow====
====left forearm====
====left hand====

==lower limbs==
===right lower limb===
====right hip====
====right thigh====
====right knee====
====right leg====
====right foot====
===left lower limb===
====left hip====
====left thigh====
====left knee====
====left leg====
====left foot====

==peripheral nervous system==

*autonomic nerve
*sympathetic trunk
*cranial nerves
*vagus nerve
*peripheral nerve

==circulatory system==
===systemic arterial system===

===systemic venous system===

===pulmonary venous system===

==lymphatic system==
===lymph nodes===

===lymphatic structures===

=foreign objects=
*needle
*probe

=segmentation regions=
*background
*unsegmented region
*user defined regions
**region 1
**region 2
**region 3
**region 4
**region 5
**region 6
**region 7
**region 8