sitkUtils Namespace Reference

Functions
def	AddNodeToMRMLScene
def	checkVolumeNodeType
def	CloneSlicerNode
def	CreateNewDisplayNode
def	CreateNewVolumeNode
def	EnsureRegistration
def	GetSlicerITKReadWriteAddress
	This assumes that you have already loaded the 'MRHead1' data from the informatics module.
def	PullFromSlicer
def	PushBackground
def	PushForeground
def	PushLabel
def	PushToSlicer
def	removeOldMRMLNode
def	slicerNotes_UnitTest
	The real work starts here.
Variables
list	__sitk__VOLUME_TYPES__ = [ 'Scalar' ]

---

Function Documentation

def sitkUtils::AddNodeToMRMLScene	(		newNode,
			nodeName = 'default',
			overwrite = False
	)

Definition at line 70 of file sitkUtils.py.

def sitkUtils::checkVolumeNodeType

(

nodeType

)

Raise an error if the node type is not a recognized volume node

Definition at line 29 of file sitkUtils.py.

def sitkUtils::CloneSlicerNode	(		NodeName,
			NewNodeNamePrefix
	)

Create a new node in slicer by cloning
        from an exising node.

Definition at line 18 of file sitkUtils.py.

def sitkUtils::CreateNewDisplayNode

(

nodeName = 'default'

)

Create a new node from scratch

Definition at line 45 of file sitkUtils.py.

def sitkUtils::CreateNewVolumeNode	(		nodeName,
			nodeType = 'vtkMRMLScalarVolumeNode',
			overwrite = False
	)

Create a new node from scratch

Definition at line 36 of file sitkUtils.py.

def sitkUtils::EnsureRegistration

(

)

This is a complete hack, but attempting to read
a dummy file with AddArchetypeVolume
has a side effect of registering
the MRMLImageIO file reader.

Definition at line 79 of file sitkUtils.py.

def sitkUtils::GetSlicerITKReadWriteAddress

(

NodeName

)

This assumes that you have already loaded the 'MRHead1' data from the informatics module.

This function will return the ITK FileIO formatted text address
        so that the image can be read directly from the MRML scene

Definition at line 7 of file sitkUtils.py.

def sitkUtils::PullFromSlicer

(

NodeName

)

Given a slicer MRML image name, return the SimpleITK
        image object.

Definition at line 88 of file sitkUtils.py.

def sitkUtils::PushBackground	(		sitkImage,
			nodeName,
			overwrite = False
	)

Definition at line 148 of file sitkUtils.py.

def sitkUtils::PushForeground	(		sitkImage,
			nodeName,
			overwrite = False
	)

Definition at line 151 of file sitkUtils.py.

def sitkUtils::PushLabel	(		sitkImage,
			nodeName,
			overwrite = False
	)

Definition at line 154 of file sitkUtils.py.

def sitkUtils::PushToSlicer	(		sitkimage,
			NodeName,
			compositeView = 0,
			overwrite = False
	)

Given a SimpleITK image, push it back to slicer for viewing
===============================================================
Viewing options
---------------
bit 0: Set as background image
bit 1: Set as foreground image
bit 2: Set as label image

Definition at line 97 of file sitkUtils.py.

def sitkUtils::removeOldMRMLNode

(

node

)

Overwrite a MRML node with the same name and class as the given node

Definition at line 54 of file sitkUtils.py.

def sitkUtils::slicerNotes_UnitTest

(

)

The real work starts here.

Definition at line 160 of file sitkUtils.py.

---

Variable Documentation

list sitkUtils::__sitk__VOLUME_TYPES__ = [ 'Scalar' ]

Definition at line 27 of file sitkUtils.py.