DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration Class Reference

List of all members.

Public Member Functions
def	__init__
def	on_entry_dicom2nrrd
def	on_exit_dicom2nrrd
def	post_widget_init
def	validate_dicom2nrrd
def	validate_dti2fibers
def	validate_dwi2dti
Public Attributes
	baseline_node
	diffusiontensorestimation_parameter_node
	diffusionweightedvolumemasking_parameter_node
	dwi_node
	dwiconvert_parameter_node
	mask_node
	seeding_parameter_node
	slicerVolumesLogic
	tensor_node
	tractography_node
Static Public Attributes
	dwi_node_name = None
dictionary	step_widget_fields
list	step_widget_files

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Detailed Description

Definition at line 14 of file full_tractography_workflow.py.

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Constructor & Destructor Documentation

def DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::__init__

(

self

)

Definition at line 51 of file full_tractography_workflow.py.

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Member Function Documentation

def DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::on_entry_dicom2nrrd	(		self,
			step_object,
			coming_from,
			transition_type,
			data
	)

Definition at line 65 of file full_tractography_workflow.py.

def DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::on_exit_dicom2nrrd	(		self,
			step_object,
			going_to,
			transition_type,
			data
	)

Definition at line 68 of file full_tractography_workflow.py.

def DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::post_widget_init	(		self,
			widget_name,
			widget
	)

Definition at line 59 of file full_tractography_workflow.py.

def DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::validate_dicom2nrrd	(		self,
			step_object,
			data
	)

Definition at line 71 of file full_tractography_workflow.py.

def DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::validate_dti2fibers	(		self,
			step_object,
			data
	)

Definition at line 188 of file full_tractography_workflow.py.

def DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::validate_dwi2dti	(		self,
			step_object,
			data
	)

Definition at line 128 of file full_tractography_workflow.py.

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Member Data Documentation

DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::baseline_node

Definition at line 128 of file full_tractography_workflow.py.

DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::diffusiontensorestimation_parameter_node

Definition at line 51 of file full_tractography_workflow.py.

DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::diffusionweightedvolumemasking_parameter_node

Definition at line 51 of file full_tractography_workflow.py.

DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::dwi_node

Definition at line 71 of file full_tractography_workflow.py.

DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::dwi_node_name = None [static]

Definition at line 49 of file full_tractography_workflow.py.

DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::dwiconvert_parameter_node

Definition at line 51 of file full_tractography_workflow.py.

DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::mask_node

Definition at line 128 of file full_tractography_workflow.py.

DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::seeding_parameter_node

Definition at line 51 of file full_tractography_workflow.py.

DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::slicerVolumesLogic

Definition at line 51 of file full_tractography_workflow.py.

dictionary DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::step_widget_fields [static]

Initial value:

{
        'dicom2nrrd':[
            ('DICOMRadioButton', 'checked'),
            ('NRRDDWIRadioButton', 'checked'),
            ('MRMLDWIRadioButton', 'checked'),
            ('inputDicomDirectory', 'directory'),
            ('outputVolume', 'currentPath'),
            ('useBMatrixGradientDirections','checked'),
            ('inputNRRDVolume','currentPath'),
            ('inputNRRDMRMLNode','currentNodeId'),
        ],
        'dwi2dti':[
            ('leastSquaresEstimation', 'checked'),
            ('weightedLeastSquaresEstimation', 'checked'),
            ('thresholdParameter', 'value'),
            ('removeIslands', 'checked'),
            ('applyMask', 'checked'),
        ],
        'dti2fibers':[
            ('seedSpacing','value'),
            ('stoppingFAValue','value'),
            ('minimumFAValueSeed','value'),
            ('stoppingTrackCurvature','value'),
        ],
        'done':[],
    }

Definition at line 22 of file full_tractography_workflow.py.

list DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::step_widget_files [static]

Initial value:

[
        'dicom2nrrd',
        'dwi2dti',
        'dti2fibers',
        'done',
    ]

Definition at line 15 of file full_tractography_workflow.py.

DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::tensor_node

Definition at line 128 of file full_tractography_workflow.py.

DICOM2FullBrainTractographyLib::full_tractography_workflow::WorkflowConfiguration::tractography_node

Definition at line 188 of file full_tractography_workflow.py.

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The documentation for this class was generated from the following file:

• Modules/Scripted/DICOM2FullBrainTractography/DICOM2FullBrainTractographyLib/full_tractography_workflow.py